View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20477_low_25 (Length: 301)
Name: NF20477_low_25
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20477_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 22 - 286
Target Start/End: Original strand, 41298069 - 41298333
Alignment:
| Q |
22 |
tttggcgaattaccaacactggtggctgggaaaaacaactttttctcaaagtcgaagggttcgtccgatggaggaaggtgcactcattgtggaaatgtca |
121 |
Q |
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| T |
41298069 |
tttggccaattaccaacactggtggctggaaaaaacaactttttctcaaagtcgaagggttcgtctgatggaggaaagtgaactcattgtggaaatgtca |
41298168 |
T |
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| Q |
122 |
aacacactcgtgatacatgtttcaagttacatgggtatccagaatggtggcatgagctgcaagccaagaagaaaaaagacaacacaacacttgaggaagg |
221 |
Q |
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| T |
41298169 |
gacacactcgtgatacatgtttcaagttacatgggtatccagaatggtggcatgagctgcaagccaagaagaaaaaagacaacacaacacttgaggaagg |
41298268 |
T |
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| Q |
222 |
cactggtaaagctgctgtagttactgccgagtctcaactctcacttgttcccatggccaatccct |
286 |
Q |
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| T |
41298269 |
cactggtaaagctgctgtagttactgccgagtctcaactctcacttgttcccatggccaatccct |
41298333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 15668901 - 15668848
Alignment:
| Q |
124 |
cacactcgtgatacatgtttcaagttacatgggtatccagaatggtggcatgag |
177 |
Q |
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| T |
15668901 |
cacacccgtgacacatgcttcaagttgcatgggtatccagaatggtggaatgag |
15668848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 5864334 - 5864281
Alignment:
| Q |
124 |
cacactcgtgatacatgtttcaagttacatgggtatccagaatggtggcatgag |
177 |
Q |
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| T |
5864334 |
cacacccgtgacacatgcttcaagttgcatgggtatccagaatggtggaatgag |
5864281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 34171318 - 34171265
Alignment:
| Q |
124 |
cacactcgtgatacatgtttcaagttacatgggtatccagaatggtggcatgag |
177 |
Q |
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| T |
34171318 |
cacacccgtgacacatgcttcaagttgcatgggtatccagaatggtggaatgag |
34171265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 526097 - 526026
Alignment:
| Q |
100 |
tgcactcattgtggaaatgtcaaacacactcgtgatacatgtttcaagttacatgggtatccagaatggtgg |
171 |
Q |
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| T |
526097 |
tgcactcattgtggaaagttgaagcatacacatgaaacttgtttcaagttacatgggtacccagaatggtgg |
526026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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