View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20477_low_26 (Length: 293)
Name: NF20477_low_26
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20477_low_26 |
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| [»] chr8 (4 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 197 - 293
Target Start/End: Original strand, 31369425 - 31369521
Alignment:
| Q |
197 |
aagaactttatacttgtatatagtaaataaggcaataaacaacttacaggacagtttcacaaaagaccacaaatttttgatcaggtgagactgcaac |
293 |
Q |
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| T |
31369425 |
aagaactttatacttgtatatagtaaataaggcaataaacaacttacaggacagtttcacaaaagaccacaaatttttgatcaggtgagactgcaac |
31369521 |
T |
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Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 31369256 - 31369333
Alignment:
| Q |
28 |
gcaagtaaggaggcttgagcccaattttcaataaaccacactcagtttgatggaaatttatttgagaatatgtatgct |
105 |
Q |
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| T |
31369256 |
gcaagtaaggaggcttgagcccaattttcaataaaccacactcagtttgatggaaatttatttgagaatatgtatgct |
31369333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 293
Target Start/End: Original strand, 31403700 - 31403743
Alignment:
| Q |
250 |
gtttcacaaaagaccacaaatttttgatcaggtgagactgcaac |
293 |
Q |
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| T |
31403700 |
gtttcacaaaagaccacaaaattttgatcaggtgagactgcaac |
31403743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 293
Target Start/End: Original strand, 31381673 - 31381732
Alignment:
| Q |
234 |
aacaacttacaggacagtttcacaaaagaccacaaatttttgatcaggtgagactgcaac |
293 |
Q |
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| T |
31381673 |
aacaacttacatggaagtttcacaaaagaccacaaaattctgatctggtgagactgcaac |
31381732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 293
Target Start/End: Original strand, 33620680 - 33620723
Alignment:
| Q |
250 |
gtttcacaaaagaccacaaatttttgatcaggtgagactgcaac |
293 |
Q |
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| T |
33620680 |
gtttcacaaaagaccacaaaattttgatcaggtgagactgcaac |
33620723 |
T |
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