View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20477_low_28 (Length: 279)
Name: NF20477_low_28
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20477_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 1209175 - 1209001
Alignment:
| Q |
20 |
tataagactaattatcgttgtctgcaatagaacattcgaattttttatacataaaatctagctgagtctcgtgttaacaatgtttttattctaagcatcg |
119 |
Q |
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| T |
1209175 |
tataagactaattatcgttgtctgcaatagaacattcgaattttttatacataaaatctagctgagtctcgtgttaacaatgtttttattctaagcatcg |
1209076 |
T |
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| Q |
120 |
atcaatctttaagctagtaaaaacactaatttagtgctt---taaaatgtttgttggtcatgttacattctagtt |
191 |
Q |
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| T |
1209075 |
atcaatctttaagctagtaaaaacactaatttagtgctttaataaaatgtttgttggtcatattacattctagtt |
1209001 |
T |
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Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 191 - 274
Target Start/End: Complemental strand, 1208933 - 1208850
Alignment:
| Q |
191 |
tagtttaaccaatcaaagaactcccttattgtgtgtaggtctaacctatgagttgttcattgctttgatccttttcatctctct |
274 |
Q |
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| T |
1208933 |
tagttgaaccaatcaaagaactcctttattgtgtgtaggtctaacctatgatgtgttcattgctttgatccttttcatatctct |
1208850 |
T |
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