View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20477_low_29 (Length: 271)
Name: NF20477_low_29
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20477_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 42340763 - 42340509
Alignment:
| Q |
1 |
cgatgatgagctttattgcgatgaacaaagattctataaggtccaaacaaaattcttcgcaaacttttgttctcaacgtccaataaaaatcattaagaag |
100 |
Q |
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| T |
42340763 |
cgatgaggagctttattgagatgaacatagattctataaggtccaaacaaaactcttcgcaaacttttgttctcaacgtccaataaaaatcattaagcag |
42340664 |
T |
|
| Q |
101 |
aaatccaaaaaatctagagctcattaaatatcagaggatattaccaacaaccttgaaaaaagaaaccaaccagttgcctattatcacttggttgttatcg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42340663 |
aaatccaaaaaatctagagctcattaaatatcagaggatattaccaacaaccttgaaaaaagaaaccaaccagttgcctattatcacttggttgtaatcg |
42340564 |
T |
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| Q |
201 |
tcggaggcgaggtcaccaatgaaggctcgacaaggtgcttggactacattatttg |
255 |
Q |
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| T |
42340563 |
tcagaggcgaggtcaccaatgaaggctcgacaaggtgtttggactacattatttg |
42340509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 30 - 247
Target Start/End: Original strand, 42275864 - 42276081
Alignment:
| Q |
30 |
gattctataaggtccaaacaaaattcttcgcaaacttttgttctcaacgtccaataaaaatcattaagaagaaatccaaaaaatctagagctcattaaat |
129 |
Q |
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|||||| |||||||||||||||| |||||| | ||| ||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||| |
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| T |
42275864 |
gattctttaaggtccaaacaaaactcttcgtagactgccgttctcaacgtccaataaaaatcattaagcaaaattccaaaaaatctagagctcattaaat |
42275963 |
T |
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| Q |
130 |
atcagaggatattaccaacaaccttgaaaaaagaaaccaaccagttgcctattatcacttggttgttatcgtcggaggcgaggtcaccaatgaaggctcg |
229 |
Q |
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| T |
42275964 |
atctgaggatattaccgacaaccttgaaaaaagaaaacaaacaatttcctattatcacttggttgttatcgtcataggcgaggtcaccgatgaaggccta |
42276063 |
T |
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| Q |
230 |
acaaggtgcttggactac |
247 |
Q |
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||||||||||||||||| |
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| T |
42276064 |
gcaaggtgcttggactac |
42276081 |
T |
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