View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20477_low_3 (Length: 541)
Name: NF20477_low_3
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20477_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 17 - 530
Target Start/End: Original strand, 49437881 - 49438394
Alignment:
| Q |
17 |
cacactcaagtacctctagttgacaaaccggatgatctatgctaatcaaaattcaatcacatcatatcaatattcaacaccaaggtccaccatatgttat |
116 |
Q |
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| T |
49437881 |
cacactcaagtacctctagttgacaaaccggatgatctatgctaatcaaaattcaatcacatcatatcaatattcaacaccaaggtccaccatatgttat |
49437980 |
T |
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| Q |
117 |
ttatattgtttattcttttgaagtacatgtgtttgaaaaattaatattttttaagttgtaacagaaaaatgataagaatgcaagaaagtttagagagcgt |
216 |
Q |
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| T |
49437981 |
ttatattgtttattcttttgaagtacatgtgtttgaaaaattaatattttttaagttgtaacagaaaaatgataagaatgcaagaaagtttagagagcgt |
49438080 |
T |
|
| Q |
217 |
attgaaggtgcatagttgcggttagaatagtatttgattacacataatgcttgaatttgaagttagttactagtagctggtagtcttgacttgggtttcc |
316 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49438081 |
attgaaggtgcatagttgcggttagaatagcatttgattacacataatgcttgaatttgaagttagttactagtagctggtagtcttgacttgggtttcc |
49438180 |
T |
|
| Q |
317 |
catttttaagtcacaaactagattaagacacttattatttacgaataaatagaatccaatcatgttcttatttggagggagagaggttgtttgcttcttt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49438181 |
catttttaagtcacaaactagattaagacacttattatttacgaataaatagaatccaatcatgttcttatttggagggagagaggttgtttgcttcttt |
49438280 |
T |
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| Q |
417 |
atcacatttacaacaacctcttcgtctaatcgctactctatcaaaatcttatatcaaaatgtttgttgaataaaataagacacatcctaaaaatcggtcc |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49438281 |
atcacatttacaacaacctcttcgtctaatcgctactctatcaaaatcttatatcaaaatgtttgttgaataaaataagacacatcctaaaaatcggtcc |
49438380 |
T |
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| Q |
517 |
ccatgttaattcat |
530 |
Q |
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|||||||||||||| |
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| T |
49438381 |
ccatgttaattcat |
49438394 |
T |
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