View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20477_low_32 (Length: 262)
Name: NF20477_low_32
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20477_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 23 - 245
Target Start/End: Original strand, 17346896 - 17347122
Alignment:
| Q |
23 |
actttatcacttgccagatccaactcatattagttaactactagcgagtagacgggtactaataattgaccg-ct------ttttctcgatacaaataat |
115 |
Q |
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| T |
17346896 |
actttatcacttgccagatccaactcatattagttaactactagcgagtagacgg-tactaaca--tgcccgtctatccgcttttctcgatacaaataat |
17346992 |
T |
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| Q |
116 |
tgacgttacaaaaatttaagctataattnnnnnnnnntcattttgtagagatatttttgcgagttaaaataaatctgtttagaatgaatgtggaagcgac |
215 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
17346993 |
tgacgttacaaaattttaagctataattaaaaaaaattcattttgtagagatatttttgcgagttaaaataaatctgtttataatgaatgtgaaagcgac |
17347092 |
T |
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| Q |
216 |
ccgtttacataaaactcttacttcattgat |
245 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
17347093 |
ccgtttacataaaactcttacttcattgat |
17347122 |
T |
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