View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20477_low_34 (Length: 247)
Name: NF20477_low_34
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20477_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 4970366 - 4970597
Alignment:
| Q |
1 |
tattgaattaagttccttccttatacattcttcattcttgcaccctttttacctttccacgcggtaattaattaattcctatatcaatgcannnnnnnnn |
100 |
Q |
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| T |
4970366 |
tattgaattaagttccttccttatacattcttcattcttgcaccctttttacctttccacgcggtaattaattaattcctatatcaatgcatttttcttt |
4970465 |
T |
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| Q |
101 |
nnncccctatatatatcaatgctcatcttgatctaattcatattcatattcatatacattttgttaatttatgtttttgtgataattttcaggtacaaat |
200 |
Q |
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| T |
4970466 |
tttcccctatatatatcaatgctcatcttgatctaattcatattcatattcatatacattttgttaatttatgtttttgtgataattttcaggtacaaat |
4970565 |
T |
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| Q |
201 |
atttcttgaggataattgagagaaagatatat |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
4970566 |
atttcttgaggataattgagagaaagatatat |
4970597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 4988275 - 4988506
Alignment:
| Q |
1 |
tattgaattaagttccttccttatacattcttcattcttgcaccctttttacctttccacgcggtaattaattaattcctatatcaatgcannnnnnnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4988275 |
tattgaattaagttccttccttatacattcttcattcttgcaccctttttacctttccacgcggtaattaattaattcctatatcaatgcatttttcttt |
4988374 |
T |
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| Q |
101 |
nnncccctatatatatcaatgctcatcttgatctaattcatattcatattcatatacattttgttaatttatgtttttgtgataattttcaggtacaaat |
200 |
Q |
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| T |
4988375 |
tttcccctatatatatcaatgctcatcttgatctaattcatattcatattcatatacattttgttaatttatgtttttgtgataattttcaggtacaaat |
4988474 |
T |
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| Q |
201 |
atttcttgaggataattgagagaaagatatat |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
4988475 |
atttcttgaggataattgagagaaagatatat |
4988506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 28571255 - 28571327
Alignment:
| Q |
18 |
tccttatacattcttcattcttgcaccctttttacctttccacgcggtaattaattaattcctatatcaatgc |
90 |
Q |
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|||||| |||||||||||| ||||||||||||| |||||| |||| ||||||||| ||||||||||||||||| |
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| T |
28571255 |
tccttacacattcttcatttttgcaccctttttccctttctacgccgtaattaataaattcctatatcaatgc |
28571327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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