View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20477_low_35 (Length: 240)
Name: NF20477_low_35
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20477_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 31369506 - 31369730
Alignment:
| Q |
1 |
caggtgagactgcaactccattaggaaagtagaggtcactaactagtagtgttgtcttttttgttgctggattataactcaaaaacctaccattagggtt |
100 |
Q |
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| T |
31369506 |
caggtgagactgcaactccattaggaaagtagaggtcactgactagtagtgttgtcttttttgttgctggattataactcaaaaacctaccattagggtt |
31369605 |
T |
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| Q |
101 |
gccttcgaatacatctaggagataatccttatacgagtattttgatgaagcgtcggtgaaataaatagtaccatcgtgtgctacatcaaccccatctgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
31369606 |
gccttcgaatacatctaggagataatccttatacgagtattttgatgaagcgtcggtgaaataaatagtaccatcatgtgcgacatcaaccccatctgtt |
31369705 |
T |
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| Q |
201 |
aatttgaattttaagccatcaatct |
225 |
Q |
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|||||||||| |||||| ||||||| |
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| T |
31369706 |
aatttgaattgtaagccgtcaatct |
31369730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 31403728 - 31403952
Alignment:
| Q |
1 |
caggtgagactgcaactccattaggaaagtagaggtcactaactagtagtgttgtcttttttgttgctggattataactcaaaaacctaccattagggtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31403728 |
caggtgagactgcaactccattaggaaagtagaggtcactaactagtagtgttgtcttttttgttgctggattataactcaaaaacctaccattaggttt |
31403827 |
T |
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| Q |
101 |
gccttcgaatacatctaggagataatccttatacgagtattttgatgaagcgtcggtgaaataaatagtaccatcgtgtgctacatcaaccccatctgtt |
200 |
Q |
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| T |
31403828 |
tccttctaatatatctaggacagaatccttgattgagtattttgatgaagcgtcggtgaaataaatagtaccatcatgtgctacatcaaccccatctgtt |
31403927 |
T |
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| Q |
201 |
aatttgaattttaagccatcaatct |
225 |
Q |
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| T |
31403928 |
aatttgaattttaagccatcaatct |
31403952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 31381719 - 31381941
Alignment:
| Q |
3 |
ggtgagactgcaactccattaggaaagtagaggtcactaactagtagtgttgtcttttttgttgctggattataactcaaaaacctaccattagggttgc |
102 |
Q |
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| T |
31381719 |
ggtgagactgcaactccattagcaatgtagaggtctctgactagtagggttgtcttttttgttgctggattataactaaaaaacctaccattagggtttc |
31381818 |
T |
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| Q |
103 |
cttcgaatacatctaggagataatccttatacgagtattttgatgaagcgtcggtgaaataaatagtaccatcgtgtgctacatcaaccccatctgttaa |
202 |
Q |
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| T |
31381819 |
cttctaatatatctaggacagaatccttgtatgagtatttggatgaagcttccgtgaaataaatagtaccatcatgtgctacatcaaccccatctattac |
31381918 |
T |
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| Q |
203 |
tttgaattttaagccatcaatct |
225 |
Q |
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||||||||||||||||||||||| |
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| T |
31381919 |
tttgaattttaagccatcaatct |
31381941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 31420254 - 31420319
Alignment:
| Q |
156 |
gtgaaataaatagtaccatcgtgtgctacatcaaccccatctgttaatttgaattttaagccatca |
221 |
Q |
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| T |
31420254 |
gtgaaataaattgtaccatcttcacctacatcaaccccatctgttaacttgaattttaatccatca |
31420319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 33620708 - 33620931
Alignment:
| Q |
1 |
caggtgagactgcaactccattaggaaagtagaggtcactaactagtagtgttgtcttttttgttgctggattataactcaaaaacctaccattagggtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33620708 |
caggtgagactgcaactccattaggaaagtagaggtcactgactagcagggttgtcttttttgttgctggattataactcaaaaacctaccattaggttt |
33620807 |
T |
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| Q |
101 |
gccttcgaatacatctaggagataatccttatacgagtattttgatgaagcgtcggtgaaataaatagtaccatcgtgtgctacatcaaccccatctgtt |
200 |
Q |
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||||| |||| |||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| |
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| T |
33620808 |
tccttctaatatatctaggacagaatccttgattgagtattttgatgaagcgtcggtgaaataaatagtaccatcatgtgcaacatcaa-cccatctgtt |
33620906 |
T |
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| Q |
201 |
aatttgaattttaagccatcaatct |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
33620907 |
aatttgaattttaagccatcaatct |
33620931 |
T |
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