View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20477_low_37 (Length: 216)

Name: NF20477_low_37

Description: NF20477

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF20477_low_37

[»] chr3 (1 HSPs)

[»] chr1 (1 HSPs)

Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 183; E-Value: 4e-99

Query Start/End: Original strand, 18 - 200

Target Start/End: Original strand, 52385842 - 52386024

Alignment:

Q	18	catgtggcaggttcccattcccaatcaacaaggaagaaggggtcaatccacaacatacaccgaaccaaagaggaagaagagaaagatgaagcgggaaagg	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	52385842	catgtggcaggttcccattcccaatcaacaaggaagaaggggtcaatccacaacatacaccgaaccaaagaggaagaagagaaagatgaagcgggaaagg	52385941	T

Q	118	catatgtgaacagcaacatacagagtatgaataattcattgatggtgcaaggttcaataaatggaagagaccccggcgttcat	200	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	52385942	catatgtgaacagcaacatacagagtatgaataattcattgatggtgcaaggttcaataaatggaagagaccccggcgttcat	52386024	T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 35; E-Value: 0.00000000008

Query Start/End: Original strand, 117 - 199

Target Start/End: Original strand, 7087813 - 7087895

Alignment:

Q	117	gcatatgtgaacagcaacatacagagtatgaataattcattgatggtgcaaggttcaataaatggaagagaccccggcgttca	199	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\| \| \|\|\| \| \|\| \|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|
T	7087813	gcatatgttaacagcaacatacaaagtatcaataattcactcatgtttcatggttcaatcaatgaaagagaccctggagttca	7087895	T

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