View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20477_low_38 (Length: 211)
Name: NF20477_low_38
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20477_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 4970298 - 4970123
Alignment:
| Q |
1 |
agcaaaagttgaatacaaacaaaatttaattaaatctttgtgatttttataataaatattttttatgagggtttgtttgtttctctaatattgctgcctt |
100 |
Q |
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| T |
4970298 |
agcaaaagttgaatacaaacaaaatttaattaaatctttgtgatttttataataaatattttttatgagggtttgtttgtttctctaatattgctgtctt |
4970199 |
T |
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| Q |
101 |
tttaaggatgatcttagaggatcctctcttcgaccatctgcttcattatgaggttgtttgttctttttctctatgg |
176 |
Q |
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| T |
4970198 |
tttaaggatgatcttagaggatcctctcttcgaccatctgcttcattatgaggttgtttgttctttttctctatgg |
4970123 |
T |
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Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 28571211 - 28571037
Alignment:
| Q |
1 |
agcaaaagttgaatacaaacaaaatttaattaaatctttgtgatttttataataaatattttttatgagggtttgtttgtttctctaatattgctgcc-t |
99 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||| | |
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| T |
28571211 |
agcaaacgttgaatacaaacaaaatttaattaaatctttgtgatttttattataaatattttttagaagggtttgtttgtttctctaatattgatgcctt |
28571112 |
T |
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| Q |
100 |
ttttaaggatgatcttagaggatcctctcttcgaccatctgcttcattatgaggttgtttgttctttttctctat |
174 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||| |||||| |||||| || |||||||||| |
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| T |
28571111 |
ttttaaggatgatcttagaggatcctctcttcgaacgtctgcttcatcatgaggatgtttgctcgttttctctat |
28571037 |
T |
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