View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20477_low_4 (Length: 534)
Name: NF20477_low_4
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20477_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 23)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 23453305 - 23453653
Alignment:
| Q |
19 |
aataacaaactacaaattaaaa-tatctaacgattcttgagcacaacaaaggccaccgattttctctcaaatctaagaactagtgaacttagtcacagct |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
23453305 |
aataacaaactacaaattaaaaatatctaacgattcttgagcacaacaaaggccaccgattttctctcagatctaagaactagtaaacttggtcacagcc |
23453404 |
T |
|
| Q |
118 |
tttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgt |
217 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23453405 |
ttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagactgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgt |
23453504 |
T |
|
| Q |
218 |
aacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| |
|
|
| T |
23453505 |
aacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgg |
23453604 |
T |
|
| Q |
318 |
gtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctaca |
366 |
Q |
| |
|
|||||| || |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23453605 |
gtgaacatgattcagaactttgaagatgtagatcttgtatgtttctaca |
23453653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 88 - 362
Target Start/End: Complemental strand, 23869007 - 23868733
Alignment:
| Q |
88 |
atctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaattt |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23869007 |
atctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgtttggccaattcaccaggaagaacaagtctgacagcagtctgaattt |
23868908 |
T |
|
| Q |
188 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcc |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23868907 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagtttctcgaagatatcattgatgaaactgttcattattcc |
23868808 |
T |
|
| Q |
288 |
catggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| |
|
|
| T |
23868807 |
catggctttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc |
23868733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 82 - 362
Target Start/End: Complemental strand, 24307504 - 24307224
Alignment:
| Q |
82 |
tctcaaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtct |
181 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24307504 |
tctcaaatctaagaactagtgaacttggtcacagctttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgacagcagtct |
24307405 |
T |
|
| Q |
182 |
gaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcat |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
24307404 |
gaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagctagtttctcgaagatatcattgatgaaactgttcat |
24307305 |
T |
|
| Q |
282 |
tattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
24307304 |
tattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatatagatcttgtatgtttc |
24307224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 89 - 366
Target Start/End: Original strand, 23408544 - 23408821
Alignment:
| Q |
89 |
tctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
188 |
Q |
| |
|
||||||| ||||| |||||||||||||| || || ||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
23408544 |
tctaagagctagtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattctccaggaagaacaagtctgaccgcggtctgaatttc |
23408643 |
T |
|
| Q |
189 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
23408644 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgataccc |
23408743 |
T |
|
| Q |
289 |
atggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctaca |
366 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23408744 |
atcgctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaagatgtagatcttgtatgtttctaca |
23408821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 85 - 362
Target Start/End: Complemental strand, 23886105 - 23885828
Alignment:
| Q |
85 |
caaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaa |
184 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23886105 |
caaatctaagaactagtaaacttggtcacagctttggttccctcagagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaa |
23886006 |
T |
|
| Q |
185 |
tttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattat |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
23886005 |
tttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgat |
23885906 |
T |
|
| Q |
285 |
tcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
362 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| |
|
|
| T |
23885905 |
acccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc |
23885828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 86 - 366
Target Start/End: Complemental strand, 23402351 - 23402071
Alignment:
| Q |
86 |
aaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaat |
185 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23402351 |
aaatctaagaactagtaaacttggtcacagctttggttccctctgagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaat |
23402252 |
T |
|
| Q |
186 |
ttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattatt |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
23402251 |
ttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgata |
23402152 |
T |
|
| Q |
286 |
cccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctaca |
366 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23402151 |
cccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttctaca |
23402071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 84 - 362
Target Start/End: Original strand, 23415708 - 23415986
Alignment:
| Q |
84 |
tcaaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctga |
183 |
Q |
| |
|
|||| ||||||| ||||| |||||||||||||| || || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23415708 |
tcaagtctaagagctagtaaacttagtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctga |
23415807 |
T |
|
| Q |
184 |
atttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatta |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23415808 |
atttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatga |
23415907 |
T |
|
| Q |
284 |
ttcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
362 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| |
|
|
| T |
23415908 |
tacccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc |
23415986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 84 - 362
Target Start/End: Complemental strand, 26833014 - 26832736
Alignment:
| Q |
84 |
tcaaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctga |
183 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| || || || ||||||||||||||||||||||||||||| || |||||||| ||||| || |||||| |
|
|
| T |
26833014 |
tcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctga |
26832915 |
T |
|
| Q |
184 |
atttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatta |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | |
|
|
| T |
26832914 |
atttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatga |
26832815 |
T |
|
| Q |
284 |
ttcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
362 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
26832814 |
tacccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc |
26832736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 84 - 362
Target Start/End: Complemental strand, 26434303 - 26434025
Alignment:
| Q |
84 |
tcaaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctga |
183 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| || || || ||||||||||||||||||||||||||||| || |||||||| ||||| || |||||| |
|
|
| T |
26434303 |
tcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctga |
26434204 |
T |
|
| Q |
184 |
atttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatta |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | |
|
|
| T |
26434203 |
atttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatga |
26434104 |
T |
|
| Q |
284 |
ttcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
362 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
26434103 |
tacccatggctttgcttgagataccaatgtctggatgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc |
26434025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 82 - 362
Target Start/End: Complemental strand, 26436085 - 26435805
Alignment:
| Q |
82 |
tctcaaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtct |
181 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||| || || || ||||||||| ||||||||||||||||||| || |||||||| ||||| || |||| |
|
|
| T |
26436085 |
tctcaaatctaagaactggtaaacttagtgacagccttggtaccctcagaaacatcatgcttggccaattcaccgggcagaacaagcctgaccgcggtct |
26435986 |
T |
|
| Q |
182 |
gaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcat |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
26435985 |
gaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggaagattcttgagtgagtttctcgaagatatcattgatgaaactgttcat |
26435886 |
T |
|
| Q |
282 |
tattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
362 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
26435885 |
gatacccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc |
26435805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 88 - 362
Target Start/End: Original strand, 34662044 - 34662318
Alignment:
| Q |
88 |
atctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaattt |
187 |
Q |
| |
|
||||||||||| || ||||| || |||||||| || || ||||| ||||||||||| |||||||| |||||||||||||| || || ||||||||||||| |
|
|
| T |
34662044 |
atctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaattt |
34662143 |
T |
|
| Q |
188 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcc |
287 |
Q |
| |
|
|||| ||||| || || ||||||||||| || | ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
34662144 |
ccctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacc |
34662243 |
T |
|
| Q |
288 |
catggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
362 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
34662244 |
catggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttc |
34662318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 397 - 523
Target Start/End: Complemental strand, 23402040 - 23401914
Alignment:
| Q |
397 |
cctgcagcggaaccaccttccttaggaagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg |
496 |
Q |
| |
|
||||| || |||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
23402040 |
cctgctgcagaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgg |
23401941 |
T |
|
| Q |
497 |
gtttcttctccgctggcttcttctctc |
523 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
23401940 |
gtttcttctccgctggcttcttctctc |
23401914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 400 - 523
Target Start/End: Complemental strand, 24307186 - 24307063
Alignment:
| Q |
400 |
gcagcggaaccaccttccttaggaagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtt |
499 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24307186 |
gcagcggaaccaccttcctttggtagcttctttcctgcctttggcttcttctcagcaggagccttctcggcgacggtggacttcttctcctctgcgggtt |
24307087 |
T |
|
| Q |
500 |
tcttctccgctggcttcttctctc |
523 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
24307086 |
tcttctctgctggcttcttctctc |
24307063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 397 - 523
Target Start/End: Original strand, 23408852 - 23408978
Alignment:
| Q |
397 |
cctgcagcggaaccaccttccttaggaagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg |
496 |
Q |
| |
|
||||| || |||||||||||||| || ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
23408852 |
cctgctgcagaaccaccttcctttggtagcttctttcctgccttgggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgg |
23408951 |
T |
|
| Q |
497 |
gtttcttctccgctggcttcttctctc |
523 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
23408952 |
gtttcttctccgctggcttcttctctc |
23408978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 406 - 523
Target Start/End: Complemental strand, 23868689 - 23868572
Alignment:
| Q |
406 |
gaaccaccttccttaggaagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttct |
505 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23868689 |
gaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctctgcgggtttcttct |
23868590 |
T |
|
| Q |
506 |
ccgctggcttcttctctc |
523 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
23868589 |
ccgctggcttcttctctc |
23868572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 406 - 523
Target Start/End: Complemental strand, 26832692 - 26832575
Alignment:
| Q |
406 |
gaaccaccttccttaggaagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttct |
505 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26832692 |
gaaccaccttcctttggaagcttctttccggcctttggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctggtttcttct |
26832593 |
T |
|
| Q |
506 |
ccgctggcttcttctctc |
523 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
26832592 |
ctgctggcttcttctctc |
26832575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 406 - 523
Target Start/End: Complemental strand, 26433981 - 26433864
Alignment:
| Q |
406 |
gaaccaccttccttaggaagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttct |
505 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26433981 |
gaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctggtttcttct |
26433882 |
T |
|
| Q |
506 |
ccgctggcttcttctctc |
523 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
26433881 |
ctgctggcttcttctctc |
26433864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 406 - 523
Target Start/End: Complemental strand, 26435761 - 26435644
Alignment:
| Q |
406 |
gaaccaccttccttaggaagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttct |
505 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26435761 |
gaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctggtttcttct |
26435662 |
T |
|
| Q |
506 |
ccgctggcttcttctctc |
523 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
26435661 |
ctgctggcttcttctctc |
26435644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 141 - 273
Target Start/End: Original strand, 23451788 - 23451920
Alignment:
| Q |
141 |
cttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattct |
240 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
23451788 |
cttggccaattcaccgggcagaacaagcctgactgcggtctgaatttcccttgaagtgattgttggcttcttgttgtagcgagcaagtctggagtattct |
23451887 |
T |
|
| Q |
241 |
tgagcaagcttctcgaagatatcattgatgaaa |
273 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||| |
|
|
| T |
23451888 |
tgagcgagcttctcaaagatatcgttgatgaaa |
23451920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 403 - 523
Target Start/End: Original strand, 23453690 - 23453810
Alignment:
| Q |
403 |
gcggaaccaccttccttaggaagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttct |
502 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||| || ||||||| |
|
|
| T |
23453690 |
gcggagccaccttccttaggaagcttctttccagcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagcaggtttct |
23453789 |
T |
|
| Q |
503 |
tctccgctggcttcttctctc |
523 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
23453790 |
tctccgctggcttcttctctc |
23453810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 400 - 523
Target Start/End: Original strand, 23416021 - 23416144
Alignment:
| Q |
400 |
gcagcggaaccaccttccttaggaagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtt |
499 |
Q |
| |
|
||||| |||||||||||||| || |||||||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| || |||| |
|
|
| T |
23416021 |
gcagctgaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagctggtt |
23416120 |
T |
|
| Q |
500 |
tcttctccgctggcttcttctctc |
523 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
23416121 |
tcttctccgctggcttcttctctc |
23416144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 406 - 523
Target Start/End: Complemental strand, 23885784 - 23885667
Alignment:
| Q |
406 |
gaaccaccttccttaggaagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttct |
505 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
23885784 |
gaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctcagctggtttcttct |
23885685 |
T |
|
| Q |
506 |
ccgctggcttcttctctc |
523 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
23885684 |
ctgctggcttcttctctc |
23885667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 414 - 506
Target Start/End: Original strand, 34662370 - 34662462
Alignment:
| Q |
414 |
ttccttaggaagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttctc |
506 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
34662370 |
ttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttcttctc |
34662462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 5e-51; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 92 - 362
Target Start/End: Complemental strand, 41670671 - 41670401
Alignment:
| Q |
92 |
aagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttccct |
191 |
Q |
| |
|
|||| |||||||| || || ||||| || ||||| ||||| ||||||||||| || | |||||| || |||||||| | || |||||||| || |||| |
|
|
| T |
41670671 |
aagagctagtgaatttggtaacagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccg |
41670572 |
T |
|
| Q |
192 |
tgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatg |
291 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||||||| ||||| ||||| |||||||| ||||||||||||||||| |||||||| || ||||| |
|
|
| T |
41670571 |
agaagtgattgtaggcttcttgttgtacctcgcaagtctggaagattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccata |
41670472 |
T |
|
| Q |
292 |
gctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
362 |
Q |
| |
|
|| |||||||||||||||||||| || ||||| || || ||||| ||||| |||||||||||||| ||||| |
|
|
| T |
41670471 |
gccttgcttgagataccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttc |
41670401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 106 - 365
Target Start/End: Complemental strand, 40796026 - 40795767
Alignment:
| Q |
106 |
ttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttg |
205 |
Q |
| |
|
||||| || ||||| ||||| || || ||||| |||||||| | ||| || |||||||| || | || ||||||||||| || | || ||||| || | |
|
|
| T |
40796026 |
ttagtgactgctttggttccctcggagacagcgtgcttggcaagttcgccgggaagaacgagacgaacagcagtctgaatctcacgagaggtgatggtag |
40795927 |
T |
|
| Q |
206 |
gcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagat |
305 |
Q |
| |
|
| ||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||| || ||||| || ||||| ||||| |
|
|
| T |
40795926 |
gtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaagatgtcattgatgaaactgttcatgatccccatagccttgctggagat |
40795827 |
T |
|
| Q |
306 |
accaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctac |
365 |
Q |
| |
|
|||||||| || ||||| || || ||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
40795826 |
tccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctac |
40795767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 84 - 214
Target Start/End: Complemental strand, 33216724 - 33216594
Alignment:
| Q |
84 |
tcaaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctga |
183 |
Q |
| |
|
|||||| ||||||| ||| ||||| |||||||| || || || |||||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||| |
|
|
| T |
33216724 |
tcaaatttaagaaccagtaaacttggtcacagccttggtaccctcagaaacagcatgtttggccaattcaccaagaagaacaagtctgacagcagtttga |
33216625 |
T |
|
| Q |
184 |
atttcccttgaagtgattgttggcttcttgt |
214 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |
|
|
| T |
33216624 |
attttccttgaagtgattgttggcttcttgt |
33216594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 112 - 362
Target Start/End: Complemental strand, 29391717 - 29391467
Alignment:
| Q |
112 |
acagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct |
211 |
Q |
| |
|
||||| || |||||||| ||||||||||| || ||||||||||| |||||||| | | || || || ||||| ||||| || || || || || |||| |
|
|
| T |
29391717 |
acagccttggttccttcggaaacagcatgtttcgccaattcaccgggaagaaccaaacgcacagccgtttgaatctccctcgacgtaatcgtcggtttct |
29391618 |
T |
|
| Q |
212 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat |
311 |
Q |
| |
|
||||||||||||| | ||| || | ||| ||||| || ||||| |||||||||||||||||||||||||| || ||||| |||||| || ||||| || |
|
|
| T |
29391617 |
tgttgtaacgagccaatctagaagcttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatccccatagctttggaagaaatacctat |
29391518 |
T |
|
| Q |
312 |
gtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
362 |
Q |
| |
|
|| || ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |
|
|
| T |
29391517 |
atcaggatgaacctgtttgagaaccttgaagatgtaaatcttataggtttc |
29391467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 45576484 - 45576399
Alignment:
| Q |
82 |
tctcaaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaag |
167 |
Q |
| |
|
|||||||||||||| || ||||| || ||||||||||| || || ||||||||| ||||||| ||||||||| | || |||||||| |
|
|
| T |
45576484 |
tctcaaatctaagagcttgtgaatttggtcacagctttggtaccctcagaaacaacatgcttagccaattcatcgggcagaacaag |
45576399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 33216594 - 33216558
Alignment:
| Q |
234 |
tgattcttgagcaagcttctcgaagatatcattgatg |
270 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33216594 |
tgattcttgagcaagcttcacgaagatatcattgatg |
33216558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 84 - 214
Target Start/End: Complemental strand, 47317561 - 47317431
Alignment:
| Q |
84 |
tcaaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctga |
183 |
Q |
| |
|
|||||| ||||||||||| ||||| ||||||||||| || || ||||||||| |||| |||||||||||||||||||||| ||||||||| |||| ||| |
|
|
| T |
47317561 |
tcaaatttaagaactagtaaacttggtcacagctttggtaccctcagaaacaacatgtttggccaattcaccaggaagaataagtctgacaacagtttga |
47317462 |
T |
|
| Q |
184 |
atttcccttgaagtgattgttggcttcttgt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
47317461 |
atttcccttgaagtgattgttggcttcttgt |
47317431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 124 - 362
Target Start/End: Original strand, 40180309 - 40180547
Alignment:
| Q |
124 |
ccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgag |
223 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||||||||| | ||| || ||||| ||||| ||||| ||||| || || ||||||||||| || | || |
|
|
| T |
40180309 |
ccttcagaaacagcatgtttagccaattctccaggaagaaccaatctaacagcagtttgaatctccctagaagtaatcgtcggcttcttgttatacctag |
40180408 |
T |
|
| Q |
224 |
caagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaac |
323 |
Q |
| |
|
| | | || ||||| ||||| || ||||| |||||||| || |||||||||||||| |||||||| || |||||||| | ||| || || || ||||| |
|
|
| T |
40180409 |
ccaaacgagacgattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaac |
40180508 |
T |
|
| Q |
324 |
ttgtttcagaactttgaatatgtagatcttgtatgtttc |
362 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| ||||| |
|
|
| T |
40180509 |
ctgtttcagaaccttgaagatgtatatcttgtaggtttc |
40180547 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 47317431 - 47317395
Alignment:
| Q |
234 |
tgattcttgagcaagcttctcgaagatatcattgatg |
270 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47317431 |
tgattcttgagcaagcttcacgaagatatcattgatg |
47317395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 458 - 523
Target Start/End: Complemental strand, 14715420 - 14715355
Alignment:
| Q |
458 |
gagctttctcggcgacggtggacttcttctcctctgcgggtttcttctccgctggcttcttctctc |
523 |
Q |
| |
|
|||||||||| |||| ||| | |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14715420 |
gagctttctcctcgacagtgtatttcttctcctctgcgggtttcttctcagctggcttcttctctc |
14715355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 14715485 - 14715433
Alignment:
| Q |
127 |
tcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagt |
179 |
Q |
| |
|
||||| ||| |||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
14715485 |
tcagacacaacatgcttggccaattctccaggaagaacaagtctcactgcagt |
14715433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 362
Target Start/End: Complemental strand, 29684826 - 29684701
Alignment:
| Q |
237 |
ttcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaact |
336 |
Q |
| |
|
||||||||| || |||| |||||||| || | ||||||||| || | |||||| ||||| ||||| | ||||||| | || ||||||||||| ||||| |
|
|
| T |
29684826 |
ttcttgagcgagtttcttaaagatatcgttcacgaaactgttaataactcccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaacc |
29684727 |
T |
|
| Q |
337 |
ttgaatatgtagatcttgtatgtttc |
362 |
Q |
| |
|
|||||||| || |||||||| ||||| |
|
|
| T |
29684726 |
ttgaatatatatatcttgtaggtttc |
29684701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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