View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20477_low_6 (Length: 510)
Name: NF20477_low_6
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20477_low_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 15 - 510
Target Start/End: Original strand, 35507114 - 35507609
Alignment:
| Q |
15 |
gagaggaaaaacatgggaaataagatggtaacatacaacaagtacaaaagagtcttgttctttatcaaaaagtataaggtgactgagctggttccacctg |
114 |
Q |
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| T |
35507114 |
gagaggaaaaacatgggaaataagatggtaacatacaacaagtacaaaagagtcttgttctttatcaaaaagtataaggtgactgagctggttccacctg |
35507213 |
T |
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| Q |
115 |
aagacctcagggagattttttctgagtttgccggaggtggatcatacatgtcaaccgagcaattacatcggtttcttgtggagcatcaaggcgaggagaa |
214 |
Q |
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| T |
35507214 |
aagacctcagggagattttttctgagtttgccggaggtggatcatacatgtcaaccgagcaattacaccggtttcttgtggagcatcaaggcgaggagaa |
35507313 |
T |
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| Q |
215 |
tttcacgttattggatacggagaaaattgttgacaaggtttggcaactgagaaggacacaacaggaaacggttcatgttgatcaacatagagaaaggaaa |
314 |
Q |
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| T |
35507314 |
tttcacgttattggatacggagaaaattgttgataagattttgcagctgagaaggacacaacaggaaacggttcatgttgatcaacatagagaaaggaaa |
35507413 |
T |
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| Q |
315 |
atcgcccttgatgatatcttccagtttttgctcctagatgatttcaatggtccttcgaaaactgaggtaaaacacagttactatgttagttagtcagtca |
414 |
Q |
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| T |
35507414 |
atcgcccttgatgatatcttccggtttttgttcctagatgatttcaatggtccttccaaaactgaggtaaaacatggtcattatgttagttattcagtta |
35507513 |
T |
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| Q |
415 |
atcagagtcttcaaatgaagatcagacaattcatgttttgaaccaaatttgctaaagtcggaacctgaatagtccaatttttgtcagatgatttca |
510 |
Q |
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| T |
35507514 |
atcagagtctttggatgaagatcagacgattcatgttttgaaccaaatttgctaaagtcggaacctgaatagtccaatcttagtcagatgatttca |
35507609 |
T |
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