View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20477_low_8 (Length: 464)

Name: NF20477_low_8
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20477_low_8
NF20477_low_8
[»] chr7 (2 HSPs)
chr7 (17-451)||(44475897-44476331)
chr7 (230-285)||(44464910-44464965)
[»] chr1 (4 HSPs)
chr1 (19-438)||(24061654-24062070)
chr1 (21-442)||(39450185-39450609)
chr1 (21-442)||(39471057-39471481)
chr1 (21-136)||(39459881-39459996)
[»] scaffold0458 (2 HSPs)
scaffold0458 (21-442)||(3012-3436)
scaffold0458 (21-136)||(13053-13168)
[»] chr2 (1 HSPs)
chr2 (212-268)||(19475227-19475283)


Alignment Details
Target: chr7 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 17 - 451
Target Start/End: Original strand, 44475897 - 44476331
Alignment:
Q  17 atattttgcttaccaaatgttgctgaattgaacgttgtagaaccatcaataacattatgatcaccagtgataatcgttcgattaatcccatctccaacca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44475897 atattttgcttaccaaatgttgctgaattgaacgttgtagaaccatcaataacattatgatcaccagtgataatcgttcgattaatcccatctccaacca 44475996  T
Q  117 tcatcaagtacttcttgtttttgggtatagatacatactcttgataaataccctcggtaacaaaaatcagaaagtaaccactactagcaaccgtgttatt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44475997 tcatcaagtacttcttgtttttgggtatagatacatactcttgataaataccctcggtaacaaaaatcagaaagtaaccactactagcaaccgtgttatt 44476096  T
Q  217 tggtgcaacgtttatagcatcattaattgttgtaaaatttccacttccatcttgattaacaatcacaatttcacttacagtaacactttcatcaattgtt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44476097 tggtgcaacgtttatagcatcattaattgttgtaaaatttccacttccatcttgattaacaatcacaatttcacttacagtaacactttcatcaattgtt 44476196  T
Q  317 tgaagtaactttcgcccatttcgatttctagctgaatcataaatagcacgcactttatctgacattttcaaaggtaaatgaccgttgtgaaaattcaaat 416  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44476197 tgaagtaactttcgcccatgtcgatttctagctgaatcataaatagcacgcactttatctgacattttgaaaggtaaatgaccgttgtgaaaattcaaat 44476296  T
Q  417 gtcttccattttgtggccatgatgtttgttttttc 451  Q
    |||||||||||||||||||||||||||||||||||    
T  44476297 gtcttccattttgtggccatgatgtttgttttttc 44476331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 285
Target Start/End: Original strand, 44464910 - 44464965
Alignment:
Q  230 atagcatcattaattgttgtaaaatttccacttccatcttgattaacaatcacaat 285  Q
    |||||||||||||| || ||||| |||||||||||||||||| ||||  |||||||    
T  44464910 atagcatcattaatcgtggtaaagtttccacttccatcttgactaaccgtcacaat 44464965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 19 - 438
Target Start/End: Original strand, 24061654 - 24062070
Alignment:
Q  19 attttgcttaccaaatgttgctgaattgaacgttgtagaaccatcaataacattatgatcaccagtgataatcgttcgattaatcccatctccaaccatc 118  Q
    ||||| ||||||||| || ||||||||||| |||||  ||||||||| |||||| || || || |||||||  ||| |||| || || ||||||||||||    
T  24061654 atttttcttaccaaaggtggctgaattgaatgttgtgaaaccatcaacaacattgtggtctcctgtgataactgtttgattgattccctctccaaccatc 24061753  T
Q  119 atcaagtacttcttgtttttgggtatagatacatactcttgataaataccctcggtaacaaaaatcagaaagtaaccactactagcaaccgtgttatttg 218  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| | ||| | ||| | ||| || |  ||||| |||  ||||||||||||||||||||    
T  24061754 atcaagtactttttgtttttgggtatagatacgtactcttgatacacacctttggtgataaatatgaagaagtatccatcactagcaaccgtgttatttg 24061853  T
Q  219 gtgcaacgtttatagcatcattaattgttgtaaaatttccacttccatcttgattaacaatcacaatttcacttacagtaacactttcatcaattgtttg 318  Q
    ||||| |   ||| |||||||| || || || || |||||||||||||||||| ||||||  ||||| ||||||||   || ||| || |||   |||||    
T  24061854 gtgcagcagctattgcatcattgatagtggtgaagtttccacttccatcttgactaacaacaacaatatcacttaccaaaatactatcttcatcggtttg 24061953  T
Q  319 aagtaactttcgcccatttcgatttctagctgaatcataaatagcacgcactttatctgacattttcaaaggtaaatgaccgttgtgaaaattcaaatgt 418  Q
    |||||  |||| |||||  ||   ||||||||||||||||||||| ||  |||||| |||||| ||||| || ||| |||| || |  ||||||||||||    
T  24061954 aagtagttttctcccatggcg---tctagctgaatcataaatagcgcgtgctttatttgacatcttcaatggcaaacgaccatttttgaaattcaaatgt 24062050  T
Q  419 cttccattttgtggccatga 438  Q
    || || ||||||||||||||    
T  24062051 ctccctttttgtggccatga 24062070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 21 - 442
Target Start/End: Complemental strand, 39450609 - 39450185
Alignment:
Q  21 tttgcttaccaaatgttgctgaattgaacgttgtagaaccatcaataacattatgatcaccagtgataatcgttcgattaatcccatctccaaccatcat 120  Q
    |||||||||||||||| || |||||||| |||||  ||||||||| |||||| || || || |||||||  ||| |||| || || ||||||||||||||    
T  39450609 tttgcttaccaaatgtagccgaattgaatgttgtgaaaccatcaacaacattgtggtctcctgtgataactgtttgattgattccctctccaaccatcat 39450510  T
Q  121 caagtacttcttgtttttgggtatagatacatactcttgataaataccctcggtaacaaaaatcagaaagtaaccactactagcaaccgtgttatttggt 220  Q
    ||||||||| |||||||||||||||||||| ||||||||||| | ||| | ||| | ||| || |  ||||| |||  ||||||||||||||||||||||    
T  39450509 caagtactttttgtttttgggtatagatacgtactcttgatacacacctttggtgataaatatgaagaagtatccatcactagcaaccgtgttatttggt 39450410  T
Q  221 gcaacgtttatagcatcattaattgttgtaaaatttccacttccatcttgattaacaatcacaatttcacttacagtaacactttcatca-----att-g 314  Q
    ||| |   ||  || ||||| ||||  ||||| |||||||||||||||||| ||||||  ||||  ||||| ||   |||||| || |||     ||| |    
T  39450409 gcagcagctacggcgtcattgattgcggtaaagtttccacttccatcttgactaacaacgacaacatcactcaccacaacactatcttcattagtattag 39450310  T
Q  315 tttgaagtaactttcgcccatttcgatttctagctgaatcataaatagcacgcactttatctgacattttcaaaggtaaatgaccgttgtgaaaattcaa 414  Q
    |||||||||  |||| |||||| ||   |||||| |||||||||||||||||  |||||| |||||| ||||| || ||| |||| || |  ||||||||    
T  39450309 tttgaagtagttttctcccattgcg---tctagcggaatcataaatagcacgtgctttatttgacatcttcaatggcaaacgaccatttttgaaattcaa 39450213  T
Q  415 atgtcttccattttgtggccatgatgtt 442  Q
    |||  |||||||||||||||||||||||    
T  39450212 atgctttccattttgtggccatgatgtt 39450185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 21 - 442
Target Start/End: Complemental strand, 39471481 - 39471057
Alignment:
Q  21 tttgcttaccaaatgttgctgaattgaacgttgtagaaccatcaataacattatgatcaccagtgataatcgttcgattaatcccatctccaaccatcat 120  Q
    |||||||||||||||| || |||||||| |||||  ||||||||| |||||| || || || |||||||  ||| |||| || || ||||||||||||||    
T  39471481 tttgcttaccaaatgtagccgaattgaatgttgtgaaaccatcaacaacattgtggtctcctgtgataactgtttgattgattccctctccaaccatcat 39471382  T
Q  121 caagtacttcttgtttttgggtatagatacatactcttgataaataccctcggtaacaaaaatcagaaagtaaccactactagcaaccgtgttatttggt 220  Q
    ||||||||| |||||||||||||||||||| ||||||||||| | ||| | ||| | ||| || |  ||||| |||  ||||||||||||||||||||||    
T  39471381 caagtactttttgtttttgggtatagatacgtactcttgatacacacctttggtgataaatatgaagaagtatccatcactagcaaccgtgttatttggt 39471282  T
Q  221 gcaacgtttatagcatcattaattgttgtaaaatttccacttccatcttgattaacaatcacaatttcacttacagtaacactttcatca-----att-g 314  Q
    ||| |   ||  || ||||| ||||  ||||| |||||||||||||||||| ||||||  ||||  ||||| ||   |||||| || |||     ||| |    
T  39471281 gcagcagctacggcgtcattgattgcggtaaagtttccacttccatcttgactaacaacgacaacatcactcaccacaacactatcttcattagtattag 39471182  T
Q  315 tttgaagtaactttcgcccatttcgatttctagctgaatcataaatagcacgcactttatctgacattttcaaaggtaaatgaccgttgtgaaaattcaa 414  Q
    |||||||||  |||| |||||| ||   |||||| |||||||||||||||||  |||||| |||||| ||||| || ||| |||| || |  ||||||||    
T  39471181 tttgaagtagttttctcccattgcg---tctagcggaatcataaatagcacgtgctttatttgacatcttcaatggcaaacgaccatttttgaaattcaa 39471085  T
Q  415 atgtcttccattttgtggccatgatgtt 442  Q
    |||  |||||||||||||||||||||||    
T  39471084 atgctttccattttgtggccatgatgtt 39471057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 39459996 - 39459881
Alignment:
Q  21 tttgcttaccaaatgttgctgaattgaacgttgtagaaccatcaataacattatgatcaccagtgataatcgttcgattaatcccatctccaaccatcat 120  Q
    |||||||||||||||| || |||||||| |||||  ||||||||| |||||| || || || |||||||  ||| |||| || || ||||||||||||||    
T  39459996 tttgcttaccaaatgtagccgaattgaatgttgtgaaaccatcaacaacattgtggtctcctgtgataactgtttgattgattccctctccaaccatcat 39459897  T
Q  121 caagtacttcttgttt 136  Q
    ||||||||| ||||||    
T  39459896 caagtactttttgttt 39459881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0458 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 21 - 442
Target Start/End: Original strand, 3012 - 3436
Alignment:
Q  21 tttgcttaccaaatgttgctgaattgaacgttgtagaaccatcaataacattatgatcaccagtgataatcgttcgattaatcccatctccaaccatcat 120  Q
    |||||||||||||||| || |||||||| |||||  ||||||||| |||||| || || || |||||||  ||| |||| || || ||||||||||||||    
T  3012 tttgcttaccaaatgtagccgaattgaatgttgtgaaaccatcaacaacattgtggtctcctgtgataactgtttgattgattccgtctccaaccatcat 3111  T
Q  121 caagtacttcttgtttttgggtatagatacatactcttgataaataccctcggtaacaaaaatcagaaagtaaccactactagcaaccgtgttatttggt 220  Q
    ||||||||| |||||||||||||||||||| ||||||||||| | ||| | ||| | ||| || |  ||||| |||  ||||||||||||||||||||||    
T  3112 caagtactttttgtttttgggtatagatacgtactcttgatacacacctttggtgataaatatgaagaagtatccatcactagcaaccgtgttatttggt 3211  T
Q  221 gcaacgtttatagcatcattaattgttgtaaaatttccacttccatcttgattaacaatcacaatttcacttacagtaacactttcatca-----att-g 314  Q
    ||| |   ||  || ||||| ||||  ||||| |||||||||||||||||| ||||||  ||||  ||||| ||   |||||| || |||     ||| |    
T  3212 gcagcagctacggcgtcattgattgcggtaaagtttccacttccatcttgactaacaacgacaacatcactcaccacaacactatcttcattagtattag 3311  T
Q  315 tttgaagtaactttcgcccatttcgatttctagctgaatcataaatagcacgcactttatctgacattttcaaaggtaaatgaccgttgtgaaaattcaa 414  Q
    |||||||||  |||| |||||| ||   |||||| |||||||||||||||||  |||||| |||||| ||||| || ||| |||| || |  ||||||||    
T  3312 tttgaagtagttttctcccattgcg---tctagcggaatcataaatagcacgtgctttatttgacatcttcaatggcaaacgaccatttttgaaattcaa 3408  T
Q  415 atgtcttccattttgtggccatgatgtt 442  Q
    |||  |||||||||||||||||||||||    
T  3409 atgctttccattttgtggccatgatgtt 3436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0458; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 13053 - 13168
Alignment:
Q  21 tttgcttaccaaatgttgctgaattgaacgttgtagaaccatcaataacattatgatcaccagtgataatcgttcgattaatcccatctccaaccatcat 120  Q
    |||||||||||||||| || |||||||| |||||  ||||||||| |||||| || || || |||||||  ||| |||| || || ||||||||||||||    
T  13053 tttgcttaccaaatgtagccgaattgaatgttgtgaaaccatcaacaacattgtggtctcctgtgataactgtttgattgattccctctccaaccatcat 13152  T
Q  121 caagtacttcttgttt 136  Q
    ||||||||| ||||||    
T  13153 caagtactttttgttt 13168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 19475283 - 19475227
Alignment:
Q  212 ttatttggtgcaacgtttatagcatcattaattgttgtaaaatttccacttccatct 268  Q
    |||||||| |||| |||||||||||||||||| ||  |||| |||||||||||||||    
T  19475283 ttatttggagcaaagtttatagcatcattaatagtgctaaagtttccacttccatct 19475227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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