View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20477_low_9 (Length: 429)
Name: NF20477_low_9
Description: NF20477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20477_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 1373957 - 1374377
Alignment:
| Q |
18 |
aatttgtttgtggccgatgtgccctcaattgctgttgaactgcggtttaaataacatcaaaaaccgctatgtcgcgaccctgattgtggtcacggacctt |
117 |
Q |
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||||||| ||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
1373957 |
aatttgtgtgtggccgatgtggcctcaattgctgtcgaactgcggtttcaataacatcaaaaaccgttatgtcgcgaccctgatcgtggtcacggacctt |
1374056 |
T |
|
| Q |
118 |
tatttaaaatccatttgagtt--------------atgtttgttttgatttctact--------tgcagaaaggatttgtgtaccgtgagaaccacagtt |
195 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1374057 |
tatttaaaatccatttgagttttgatggttaacatatgtttgttttgacttctacttgcttacttgcagaaaggatttgtgtaccgtgagaaccacagtt |
1374156 |
T |
|
| Q |
196 |
caccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaacggatgcttctcaagtgttgaaggagcttgatgaagttgt |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1374157 |
caccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagtgttgaaggagcttgatgaagttgt |
1374256 |
T |
|
| Q |
296 |
tgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatcagtttcattgcacacacacctgcagtctactaa |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
1374257 |
tgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatcagtttcattgcacacacacctgaagtttactaa |
1374356 |
T |
|
| Q |
396 |
acttgagtgttaaatcactct |
416 |
Q |
| |
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| ||||||||||||||||||| |
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| T |
1374357 |
atttgagtgttaaatcactct |
1374377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 154 - 417
Target Start/End: Original strand, 1350657 - 1350920
Alignment:
| Q |
154 |
tctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagc |
253 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1350657 |
tctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagc |
1350756 |
T |
|
| Q |
254 |
aacggatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagtt |
353 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1350757 |
aactgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagtt |
1350856 |
T |
|
| Q |
354 |
caatgcatcagtttcattgcacacacacctgcagtctactaaacttgagtgttaaatcactctc |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
1350857 |
caatgcatcagtttcattgcacacacacctgcggtctactaaatttgagtgttaaatcactctc |
1350920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 154 - 421
Target Start/End: Original strand, 1358563 - 1358830
Alignment:
| Q |
154 |
tctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagc |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1358563 |
tctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagc |
1358662 |
T |
|
| Q |
254 |
aacggatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagtt |
353 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1358663 |
aactgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagtt |
1358762 |
T |
|
| Q |
354 |
caatgcatcagtttcattgcacacacacctgcagtctactaaacttgagtgttaaatcactctctgct |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||| |||||| || |||||||||||||| |
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| T |
1358763 |
caatgcatcagtttcattgcacacacacctgaagtttactaagtttgagtatttaatcactctctgct |
1358830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 154 - 402
Target Start/End: Original strand, 1390416 - 1390664
Alignment:
| Q |
154 |
tctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagc |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1390416 |
tctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagc |
1390515 |
T |
|
| Q |
254 |
aacggatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagtt |
353 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1390516 |
aactgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagtt |
1390615 |
T |
|
| Q |
354 |
caatgcatcagtttcattgcacacacacctgcagtctactaaacttgag |
402 |
Q |
| |
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||||||||||||||||||||||||||||||| || ||||||| ||||| |
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| T |
1390616 |
caatgcatcagtttcattgcacacacacctgatgtttactaaatttgag |
1390664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 154 - 384
Target Start/End: Original strand, 1384311 - 1384541
Alignment:
| Q |
154 |
tctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagc |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1384311 |
tctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagc |
1384410 |
T |
|
| Q |
254 |
aacggatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagtt |
353 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1384411 |
aactgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagtt |
1384510 |
T |
|
| Q |
354 |
caatgcatcagtttcattgcacacacacctg |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
1384511 |
caatgcatcagtttcattgcacacacacctg |
1384541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 154 - 384
Target Start/End: Original strand, 1394662 - 1394892
Alignment:
| Q |
154 |
tctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagc |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1394662 |
tctacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagc |
1394761 |
T |
|
| Q |
254 |
aacggatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagtt |
353 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
1394762 |
aactgatgcttctcaagtgttgaaggagcttgatgaagttgttgatgcttaccctaatgcctttgtccgtatcatcggattcgacaaagttcgtcaagtt |
1394861 |
T |
|
| Q |
354 |
caatgcatcagtttcattgcacacacacctg |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
1394862 |
caatgcatcagtttcattgcacacacacctg |
1394892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 163 - 395
Target Start/End: Original strand, 7010315 - 7010547
Alignment:
| Q |
163 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaacggatgc |
262 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| | |
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| T |
7010315 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattc |
7010414 |
T |
|
| Q |
263 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatc |
362 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
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|
| T |
7010415 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
7010514 |
T |
|
| Q |
363 |
agtttcattgcacacacacctgcagtctactaa |
395 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||| |
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|
| T |
7010515 |
agtttcattgctcacacaccagcaacctactaa |
7010547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 163 - 395
Target Start/End: Original strand, 7007237 - 7007469
Alignment:
| Q |
163 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaacggatgc |
262 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| | |
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|
| T |
7007237 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattc |
7007336 |
T |
|
| Q |
263 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaatgcatc |
362 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||||||| || ||||| |
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|
| T |
7007337 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
7007436 |
T |
|
| Q |
363 |
agtttcattgcacacacacctgcagtctactaa |
395 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||| |
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|
| T |
7007437 |
agtttcattgctcacacaccagcaacctactaa |
7007469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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