View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20478_high_2 (Length: 523)

Name: NF20478_high_2
Description: NF20478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20478_high_2
NF20478_high_2
[»] chr8 (13 HSPs)
chr8 (15-220)||(29960910-29961112)
chr8 (226-388)||(4834917-4835079)
chr8 (387-508)||(29961111-29961229)
chr8 (258-320)||(41474293-41474355)
chr8 (313-376)||(33938562-33938625)
chr8 (313-376)||(16499779-16499842)
chr8 (277-335)||(20896187-20896245)
chr8 (228-308)||(16467583-16467663)
chr8 (313-376)||(16508704-16508767)
chr8 (252-338)||(35793177-35793263)
chr8 (281-335)||(44077744-44077798)
chr8 (277-334)||(44132874-44132931)
chr8 (329-385)||(16467673-16467729)
[»] chr4 (17 HSPs)
chr4 (228-385)||(52673148-52673305)
chr4 (228-376)||(29544121-29544269)
chr4 (219-368)||(46079307-46079456)
chr4 (226-376)||(53406448-53406597)
chr4 (232-371)||(29693184-29693321)
chr4 (273-333)||(29724351-29724411)
chr4 (283-323)||(40202260-40202300)
chr4 (277-334)||(53176872-53176929)
chr4 (277-325)||(30643602-30643650)
chr4 (274-334)||(44015413-44015473)
chr4 (284-323)||(1208706-1208745)
chr4 (283-334)||(19473052-19473103)
chr4 (277-332)||(31455897-31455952)
chr4 (313-379)||(9116201-9116267)
chr4 (273-334)||(52198377-52198438)
chr4 (277-333)||(50041816-50041872)
chr4 (277-333)||(50049038-50049094)
[»] chr2 (13 HSPs)
chr2 (230-385)||(6752024-6752179)
chr2 (228-345)||(39728970-39729087)
chr2 (236-385)||(41069623-41069772)
chr2 (228-373)||(31750448-31750591)
chr2 (226-338)||(23395915-23396027)
chr2 (230-338)||(11226132-11226240)
chr2 (277-338)||(32832590-32832651)
chr2 (245-308)||(3496805-3496868)
chr2 (245-308)||(15141881-15141944)
chr2 (251-376)||(19037016-19037130)
chr2 (277-323)||(36562752-36562798)
chr2 (277-334)||(13477690-13477747)
chr2 (285-334)||(40204728-40204777)
[»] chr1 (19 HSPs)
chr1 (235-391)||(48914929-48915085)
chr1 (226-385)||(48915127-48915284)
chr1 (244-391)||(48915320-48915467)
chr1 (228-385)||(50539678-50539835)
chr1 (228-386)||(26478546-26478704)
chr1 (228-385)||(19456261-19456417)
chr1 (228-337)||(24671140-24671249)
chr1 (277-322)||(20717120-20717165)
chr1 (219-308)||(27032326-27032415)
chr1 (273-333)||(49177424-49177483)
chr1 (313-376)||(48843434-48843497)
chr1 (277-323)||(5398034-5398080)
chr1 (226-374)||(27907685-27907822)
chr1 (277-338)||(49177278-49177337)
chr1 (277-334)||(19431391-19431448)
chr1 (329-388)||(51748626-51748685)
chr1 (277-338)||(17923859-17923920)
chr1 (275-324)||(25586867-25586916)
chr1 (287-335)||(3950295-3950343)
[»] chr7 (15 HSPs)
chr7 (235-386)||(2628385-2628536)
chr7 (228-379)||(9488725-9488877)
chr7 (277-379)||(32279250-32279352)
chr7 (245-376)||(16876686-16876806)
chr7 (245-385)||(46425278-46425407)
chr7 (313-385)||(34328163-34328235)
chr7 (277-318)||(33747989-33748030)
chr7 (277-338)||(37685187-37685248)
chr7 (245-379)||(23185870-23185992)
chr7 (245-308)||(18867954-18868017)
chr7 (284-337)||(11369053-11369106)
chr7 (273-314)||(15667897-15667938)
chr7 (273-334)||(32204771-32204832)
chr7 (283-324)||(43368497-43368538)
chr7 (228-303)||(34328091-34328164)
[»] chr3 (14 HSPs)
chr3 (228-376)||(10688592-10688740)
chr3 (276-385)||(47548868-47548977)
chr3 (228-376)||(50700003-50700144)
chr3 (277-351)||(46348376-46348450)
chr3 (245-385)||(4037142-4037271)
chr3 (219-308)||(49279464-49279553)
chr3 (277-338)||(39485467-39485528)
chr3 (277-321)||(39488495-39488539)
chr3 (245-308)||(11233507-11233570)
chr3 (313-376)||(39350752-39350815)
chr3 (327-373)||(34272415-34272461)
chr3 (284-318)||(42466974-42467008)
chr3 (285-334)||(16278813-16278862)
chr3 (313-385)||(39994249-39994321)
[»] chr5 (14 HSPs)
chr5 (258-386)||(34928806-34928936)
chr5 (263-373)||(27554885-27554995)
chr5 (234-379)||(22658818-22658962)
chr5 (240-376)||(2651618-2651745)
chr5 (284-368)||(14151909-14151993)
chr5 (245-385)||(37515524-37515652)
chr5 (273-338)||(18267851-18267916)
chr5 (277-334)||(33953161-33953218)
chr5 (313-385)||(37480340-37480412)
chr5 (277-324)||(18623597-18623644)
chr5 (320-387)||(22473601-22473667)
chr5 (277-335)||(22653513-22653571)
chr5 (277-334)||(19824617-19824674)
chr5 (283-334)||(14281810-14281862)
[»] chr6 (9 HSPs)
chr6 (245-385)||(9928262-9928391)
chr6 (272-334)||(26847168-26847230)
chr6 (278-334)||(457683-457739)
chr6 (227-308)||(31743843-31743922)
chr6 (313-374)||(22469757-22469818)
chr6 (287-334)||(24226101-24226148)
chr6 (245-314)||(9549369-9549436)
chr6 (251-308)||(7506639-7506696)
chr6 (219-303)||(22469674-22469758)
[»] scaffold0176 (1 HSPs)
scaffold0176 (313-376)||(15149-15212)
[»] scaffold0289 (1 HSPs)
scaffold0289 (273-314)||(20314-20355)


Alignment Details
Target: chr8 (Bit Score: 142; Significance: 3e-74; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 29960910 - 29961112
Alignment:
Q  15 ataatacttcaaatgaatttattgattaaatttgtatagannnnnnnnatgatataatgcatgcaagaatgactgagcccaatcgatgtcccactttatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||        ||||||||||| |    |||||||||||||||| ||||||||||||||||||    
T  29960910 ataatacttcaaatgaatttattgattaaatttgtatagattttttttatgatataatgta----agaatgactgagcccagtcgatgtcccactttatt 29961005  T
Q  115 gtgccgattttgaaactttgttgcatgttttgagggattgcaagattaggtggcaaaagcagtttctaacaactagtctt-ggggaattaagtgtctcat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  29961006 gtgccgattttgaaactttgttgcatgttttgagggattgcaagattaggtggcaaaagcagtttctaacaactagtcttgggggaagtaagtgtctcat 29961105  T
Q  214 tagagtt 220  Q
    | |||||    
T  29961106 tggagtt 29961112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 226 - 388
Target Start/End: Complemental strand, 4835079 - 4834917
Alignment:
Q  226 cattggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctcta 325  Q
    |||||||| ||||||||||||||||| ||||  ||||||| ||||  ||| ||| | | ||||||||||||||||||| |||||||||||||| |||||     
T  4835079 cattggtgccattgatacttttgtgtctatctttctcttaacaactcattctctttcacctaaataatttattttaatcattcattcatcattctctctc 4834980  T
Q  326 atctaaaatgaacatatatcatcaatagcaccaaaaaactatggcacccaaatacttcccatt 388  Q
    ||||||||||||| ||| ||| ||||| ||||||||||||||||||||||| || ||||||||    
T  4834979 atctaaaatgaacctatgtcaccaatatcaccaaaaaactatggcacccaagtatttcccatt 4834917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 387 - 508
Target Start/End: Original strand, 29961111 - 29961229
Alignment:
Q  387 tttttcaactaaaagtagctgggaatgaca----attgagaacagaagatgtgtgtgaataactaactaacttgttcaaatgatgaatccatctcctttt 482  Q
    ||||||||||| |||||||| |||||||||    |||||||| |||||||||||||||||||||||||    |||||| ||||   ||||||||||||||    
T  29961111 tttttcaactagaagtagctaggaatgacagacaattgagaagagaagatgtgtgtgaataactaact----tgttcacatga---atccatctcctttt 29961203  T
Q  483 gtatttatatagatagatagaaacat 508  Q
    ||||||||||||||||||| ||||||    
T  29961204 gtatttatatagatagatataaacat 29961229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 258 - 320
Target Start/End: Complemental strand, 41474355 - 41474293
Alignment:
Q  258 ctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcatttt 320  Q
    |||||||| |||| ||||||||||||| |||||||||||||||||| |||||||||| |||||    
T  41474355 ctctcttaacaacttattatctcttatttaaataatttattttaatcattcattcattatttt 41474293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 376
Target Start/End: Complemental strand, 33938625 - 33938562
Alignment:
Q  313 atcattttctctaatctaaaatgaacatatatcatcaatagcaccaaaaaactatggcacccaa 376  Q
    |||||| ||| | ||||||||||||| ||| |||||||| ||||||||||||||||||||||||    
T  33938625 atcattatcttttatctaaaatgaacctatgtcatcaatggcaccaaaaaactatggcacccaa 33938562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 313 - 376
Target Start/End: Complemental strand, 16499842 - 16499779
Alignment:
Q  313 atcattttctctaatctaaaatgaacatatatcatcaatagcaccaaaaaactatggcacccaa 376  Q
    |||||| ||||| || |||||||||| ||||||| ||||  |||||||||||||||||||||||    
T  16499842 atcattctctctcatataaaatgaacctatatcaccaatgtcaccaaaaaactatggcacccaa 16499779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 335
Target Start/End: Complemental strand, 20896245 - 20896187
Alignment:
Q  277 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatg 335  Q
    ||||| ||||||||||||||||||||| ||||||  |||||| ||||| ||||||||||    
T  20896245 tctctcatctaaataatttattttaatcattcatatatcattatctctcatctaaaatg 20896187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 308
Target Start/End: Original strand, 16467583 - 16467663
Alignment:
Q  228 ttggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 308  Q
    |||||||||| ||||  |||||||||||| ||||||||  ||  |||| ||||| |||||||||||||| |||||| ||||    
T  16467583 ttggtgtcatagataactttgtgtttatctctctcttaataatttattctctctcatctaaataatttagtttaatcattc 16467663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 376
Target Start/End: Complemental strand, 16508767 - 16508704
Alignment:
Q  313 atcattttctctaatctaaaatgaacatatatcatcaatagcaccaaaaaactatggcacccaa 376  Q
    |||||| ||||| || |||||||||| ||||||| ||||  |||||||||| ||||||||||||    
T  16508767 atcattctctctcatataaaatgaacctatatcaccaatgtcaccaaaaaaatatggcacccaa 16508704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 338
Target Start/End: Original strand, 35793177 - 35793263
Alignment:
Q  252 ttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatgaac 338  Q
    ||||| |||||||| | ||  ||||||||| || |||||||||||||||||| |||||||  ||||| || || |||| ||||||||    
T  35793177 ttatctctctcttaactactcattatctctcatttaaataatttattttaattattcatttttcattgtcactcatctcaaatgaac 35793263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 335
Target Start/End: Complemental strand, 44077798 - 44077744
Alignment:
Q  281 ttatctaaataatttattttaataattcattcatcattttctctaatctaaaatg 335  Q
    ||||||||||||||||||||||| ||| |||||||| | ||| | ||||||||||    
T  44077798 ttatctaaataatttattttaattatttattcatcactctctttcatctaaaatg 44077744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 44132931 - 44132874
Alignment:
Q  277 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaat 334  Q
    ||||| ||| ||||||||||||||||| ||||||  |||||| ||||| |||||||||    
T  44132931 tctctcatcaaaataatttattttaatcattcatctatcattatctctcatctaaaat 44132874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 385
Target Start/End: Original strand, 16467673 - 16467729
Alignment:
Q  329 taaaatgaacatatatcatcaatagcaccaaaaaactatggcacccaaatacttccc 385  Q
    |||||||||| ||||||| ||||  |||||||||||||| |||||||| || |||||    
T  16467673 taaaatgaacctatatcaccaatgtcaccaaaaaactatcgcacccaagtatttccc 16467729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 228 - 385
Target Start/End: Complemental strand, 52673305 - 52673148
Alignment:
Q  228 ttggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaat 327  Q
    ||||||||||||||| |||||||| |||| |||||||||||||||||| ||||| ||| ||||||||||||||||| |||||||||||||| ||||| ||    
T  52673305 ttggtgtcattgatatttttgtgtctatctctctcttaccaacatattctctctcatcaaaataatttattttaattattcattcatcattctctctcat 52673206  T
Q  328 ctaaaatgaacatatatcatcaatagcaccaaaaaactatggcacccaaatacttccc 385  Q
    ||||||||||| ||| ||| ||||  ||||||||||||||||||||||| || |||||    
T  52673205 ctaaaatgaacctatgtcaccaatgacaccaaaaaactatggcacccaagtatttccc 52673148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 228 - 376
Target Start/End: Complemental strand, 29544269 - 29544121
Alignment:
Q  228 ttggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaat 327  Q
    |||||| |||||| || ||||||| |||| |||| ||| ||||  ||| ||| | ||||||||||||||||||||| ||||||| |||||||||||| ||    
T  29544269 ttggtgccattgacacctttgtgtctatctctctattaacaactcattctctatcatctaaataatttattttaatcattcatttatcattttctctcat 29544170  T
Q  328 ctaaaatgaacatatatcatcaatagcaccaaaaaactatggcacccaa 376  Q
    ||||||||||||||| ||| |||| |||||||||||||||| |||||||    
T  29544169 ctaaaatgaacatatgtcaccaatggcaccaaaaaactatgacacccaa 29544121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 219 - 368
Target Start/End: Complemental strand, 46079456 - 46079307
Alignment:
Q  219 ttggtatcattggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcatt 318  Q
    ||||| ||||||||| ||||   || ||||||| ||||  ||||||| ||||  ||| ||||| ||||||||||||||||||||| ||||||| ||||||    
T  46079456 ttggtgtcattggtgccattagcacatttgtgtctatctgtctcttaacaactcattctctctcatctaaataatttattttaatcattcattgatcatt 46079357  T
Q  319 ttctctaatctaaaatgaacatatatcatcaatagcaccaaaaaactatg 368  Q
     ||||| ||||||||||||| ||| |||||||| ||||||||||||||||    
T  46079356 ctctctcatctaaaatgaacctatgtcatcaatggcaccaaaaaactatg 46079307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 226 - 376
Target Start/End: Complemental strand, 53406597 - 53406448
Alignment:
Q  226 cattggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctcta 325  Q
    |||||||||||||||||| || |||| |||| |||||||| |||   ||| ||||||||||||||||||||||||||| ||| |||||||||||||| |     
T  53406597 cattggtgtcattgatacctt-gtgtctatctctctcttaacaattcattttctcttatctaaataatttattttaattatttattcatcattttctttc 53406499  T
Q  326 atctaaaatgaacatatatcatcaatagcaccaaaaaactatggcacccaa 376  Q
    ||||||||||||||| ||||| |||  ||| ||||||  |||| |||||||    
T  53406498 atctaaaatgaacatgtatcaccaacggcatcaaaaagttatgacacccaa 53406448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 232 - 371
Target Start/End: Original strand, 29693184 - 29693321
Alignment:
Q  232 tgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaatctaa 331  Q
    |||||||| ||||||||||| ||||  ||||||| |||||||||||||||||| |||||||||||||||||| ||| ||| |||||| ||||| ||||||    
T  29693184 tgtcattggtacttttgtgtctatc--tctcttaacaacatattatctcttatttaaataatttattttaattatttatttatcattctctctcatctaa 29693281  T
Q  332 aatgaacatatatcatcaatagcaccaaaaaactatggca 371  Q
    ||||||   || | |||||| ||| ||||||| |||||||    
T  29693282 aatgaatccatgttatcaatggcatcaaaaaattatggca 29693321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 333
Target Start/End: Complemental strand, 29724411 - 29724351
Alignment:
Q  273 attatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaa 333  Q
    ||||||||||||||||||||||||||||||| ||||||| || ||| ||| | ||||||||    
T  29724411 attatctcttatctaaataatttattttaatcattcatttattattctctatcatctaaaa 29724351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 40202300 - 40202260
Alignment:
Q  283 atctaaataatttattttaataattcattcatcattttctc 323  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  40202300 atctaaataatttattttaataattcattcatcattatctc 40202260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 334
Target Start/End: Original strand, 53176872 - 53176929
Alignment:
Q  277 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaat 334  Q
    ||||| ||||||||||||||||||||| |||||||||| || |||| | |||||||||    
T  53176872 tctctcatctaaataatttattttaatcattcattcattatcttctgtcatctaaaat 53176929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 325
Target Start/End: Complemental strand, 30643650 - 30643602
Alignment:
Q  277 tctcttatctaaataatttattttaataattcattcatcattttctcta 325  Q
    ||||| ||||||||||||||||||||| |||||| ||||||| ||||||    
T  30643650 tctctcatctaaataatttattttaatcattcatccatcattatctcta 30643602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 44015473 - 44015413
Alignment:
Q  274 ttatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaat 334  Q
    |||||||| ||||||||||||||||||||| ||||||  |||||| | ||| |||||||||    
T  44015473 ttatctctcatctaaataatttattttaatcattcatctatcattctttctcatctaaaat 44015413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 323
Target Start/End: Complemental strand, 1208745 - 1208706
Alignment:
Q  284 tctaaataatttattttaataattcattcatcattttctc 323  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  1208745 tctaaataatttattttaatcattcattcatcattctctc 1208706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 334
Target Start/End: Complemental strand, 19473103 - 19473052
Alignment:
Q  283 atctaaataatttattttaataattcattcatcattttctctaatctaaaat 334  Q
    ||||||||||||||||||||| ||||||  ||||||||||||  ||||||||    
T  19473103 atctaaataatttattttaatcattcatgtatcattttctctcctctaaaat 19473052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 332
Target Start/End: Complemental strand, 31455952 - 31455897
Alignment:
Q  277 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaa 332  Q
    ||||| ||||||||||||||||||||| |||||||| ||||| ||| | |||||||    
T  31455952 tctctcatctaaataatttattttaatcattcattcttcattctctttcatctaaa 31455897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 379
Target Start/End: Complemental strand, 9116267 - 9116201
Alignment:
Q  313 atcattttctctaatctaaaatgaacatatatcatcaatagcaccaaaaaactatggcacccaaata 379  Q
    |||||| ||| | ||||||||||||| ||| ||||||||   ||||||||| |||||||||||||||    
T  9116267 atcattctctttcatctaaaatgaacctatgtcatcaatgagaccaaaaaattatggcacccaaata 9116201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 334
Target Start/End: Original strand, 52198377 - 52198438
Alignment:
Q  273 attatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaat 334  Q
    ||||||||| ||| ||||||||||||||||| ||| ||  |||||| ||||| |||||||||    
T  52198377 attatctctcatcaaaataatttattttaatcatttatctatcattatctctcatctaaaat 52198438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 50041872 - 50041816
Alignment:
Q  277 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaa 333  Q
    ||||| ||| ||||||||||||||||| ||||||  |||||| ||||| ||||||||    
T  50041872 tctctcatcaaaataatttattttaatcattcatctatcattatctctcatctaaaa 50041816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 50049094 - 50049038
Alignment:
Q  277 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaa 333  Q
    ||||| ||| ||||||||||||||||| ||||||  |||||| ||||| ||||||||    
T  50049094 tctctcatcaaaataatttattttaatcattcatctatcattatctctcatctaaaa 50049038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 230 - 385
Target Start/End: Complemental strand, 6752179 - 6752024
Alignment:
Q  230 ggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaatct 329  Q
    |||||||||||||| | ||||| |||| |||||||| |||| || | ||||| ||||||||||||||||||||| ||||||| |||||| ||||| ||||    
T  6752179 ggtgtcattgatacctctgtgtctatctctctcttaacaacttactttctctcatctaaataatttattttaatcattcatttatcattctctctcatct 6752080  T
Q  330 aaaatgaacatatatcatcaatagcaccaaaaaactatggcacccaaatacttccc 385  Q
    ||||||||| ||| |||||||| | |||||||||||||||||||||| || |||||    
T  6752079 aaaatgaacttatgtcatcaatggtaccaaaaaactatggcacccaagtatttccc 6752024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 228 - 345
Target Start/End: Original strand, 39728970 - 39729087
Alignment:
Q  228 ttggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaat 327  Q
    |||||| ||||||||||||||||| |||  || ||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||| ||||| ||    
T  39728970 ttggtgccattgatacttttgtgtctatttctttcttaccaacatattctctctcatctaaataatttattttaatcattcattcatcattctctctcat 39729069  T
Q  328 ctaaaatgaacatatatc 345  Q
    ||||||||||| ||||||    
T  39729070 ctaaaatgaacttatatc 39729087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 236 - 385
Target Start/End: Complemental strand, 41069772 - 41069623
Alignment:
Q  236 attgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatg 335  Q
    |||||||| ||||||| ||||  ||||||| |||   ||| ||||| ||||||||||||||||||||| |||||||||||||| ||||| ||||||||||    
T  41069772 attgatacatttgtgtctatctgtctcttaacaattcattctctctcatctaaataatttattttaatcattcattcatcattctctctcatctaaaatg 41069673  T
Q  336 aacatatatcatcaatagcaccaaaaaactatggcacccaaatacttccc 385  Q
    ||| ||| ||| |||| ||||||||||| |||||||||||| || |||||    
T  41069672 aacctatgtcaccaatggcaccaaaaaattatggcacccaagtatttccc 41069623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 228 - 373
Target Start/End: Original strand, 31750448 - 31750591
Alignment:
Q  228 ttggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaat 327  Q
    |||||| ||||||||| ||||||| |||| |||||||| |||   ||| ||||| ||||||||  ||||||||||| |||||||||||||| ||| | ||    
T  31750448 ttggtgccattgatacctttgtgtctatctctctcttaacaattcattttctctcatctaaat--tttattttaatcattcattcatcattctctgtgat 31750545  T
Q  328 ctaaaatgaacatatatcatcaatagcaccaaaaaactatggcacc 373  Q
    |||||||||| |||| ||| |||| ||||||| |||||||||||||    
T  31750546 ctaaaatgaatatatgtcaccaatggcaccaacaaactatggcacc 31750591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 226 - 338
Target Start/End: Original strand, 23395915 - 23396027
Alignment:
Q  226 cattggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctcta 325  Q
    |||||||||||||| ||| ||||||| |||| |||||||| ||||  ||| ||| | ||||||||||||||||||||| ||||||| |||||| |||||     
T  23395915 cattggtgtcattggtacatttgtgtctatctctctcttaacaactcattctctatcatctaaataatttattttaatcattcatttatcattctctctc 23396014  T
Q  326 atctaaaatgaac 338  Q
    |||||||||||||    
T  23396015 atctaaaatgaac 23396027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 11226132 - 11226240
Alignment:
Q  230 ggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaatct 329  Q
    |||| ||||| ||| ||||||| |||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| |||||||| ||||| ||||| || |    
T  11226132 ggtgccattggtacctttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattcattcgtcattctctctcattt 11226231  T
Q  330 aaaatgaac 338  Q
    |||||||||    
T  11226232 aaaatgaac 11226240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 338
Target Start/End: Complemental strand, 32832651 - 32832590
Alignment:
Q  277 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatgaac 338  Q
    ||||| ||||||||||||||||||||| |||||| || |||| ||||| |||||||||||||    
T  32832651 tctctcatctaaataatttattttaatcattcatccaacattctctctcatctaaaatgaac 32832590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 3496868 - 3496805
Alignment:
Q  245 tttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 308  Q
    ||||||| |||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| ||||    
T  3496868 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 3496805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 15141881 - 15141944
Alignment:
Q  245 tttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 308  Q
    ||||||| |||| |||| ||| |||| |||| ||||| ||||||||||||||||||||| ||||    
T  15141881 tttgtgtctatctctcttttaacaacttattctctctcatctaaataatttattttaatcattc 15141944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 376
Target Start/End: Complemental strand, 19037130 - 19037016
Alignment:
Q  251 tttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatgaacatatatcatcaa 350  Q
    |||||| |||||||| ||||  ||| ||||| |||||||||||||||||||           |||||| ||| | ||||||||||||| ||| ||| |||    
T  19037130 tttatctctctcttaacaactcattctctctcatctaaataatttatttta-----------atcattctctttcatctaaaatgaacctatgtcaccaa 19037042  T
Q  351 tagcaccaaaaaactatggcacccaa 376  Q
    | |||| |||||||||||||||||||    
T  19037041 tggcactaaaaaactatggcacccaa 19037016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 323
Target Start/End: Complemental strand, 36562798 - 36562752
Alignment:
Q  277 tctcttatctaaataatttattttaataattcattcatcattttctc 323  Q
    ||||| ||||||||||||||||||| | |||||||||||||| ||||    
T  36562798 tctctcatctaaataatttattttactcattcattcatcattctctc 36562752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 13477747 - 13477690
Alignment:
Q  277 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaat 334  Q
    ||||| || ||||||| |||||||||| |||||||||||||| ||||| ||| |||||    
T  13477747 tctctcatttaaataaattattttaatcattcattcatcattctctcttatccaaaat 13477690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 40204777 - 40204728
Alignment:
Q  285 ctaaataatttattttaataattcattcatcattttctctaatctaaaat 334  Q
    ||||||||||||||||||||||||||  |||||| ||||| || ||||||    
T  40204777 ctaaataatttattttaataattcatctatcattctctctcatgtaaaat 40204728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 235 - 391
Target Start/End: Complemental strand, 48915085 - 48914929
Alignment:
Q  235 cattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaat 334  Q
    ||||||||||||||||| |||| |||||||| ||||  ||| ||||| ||| ||||||||||||||||| |||||||||||||| ||||| |||||||||    
T  48915085 cattgatacttttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattcattcatcattctctctcatctaaaat 48914986  T
Q  335 gaacatatatcatcaatagcaccaaaaaactatggcacccaaatacttcccattttt 391  Q
    |||| ||| ||| ||||  ||| ||||||||||||||||||| || ||||| |||||    
T  48914985 gaacttatgtcaccaatgtcacaaaaaaactatggcacccaagtatttccccttttt 48914929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 226 - 385
Target Start/End: Complemental strand, 48915284 - 48915127
Alignment:
Q  226 cattggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctcta 325  Q
    |||||||| ||||||||||||||||| |||| |||||||| ||||  ||| ||||| ||| ||||||||||||||||| ||||||||||||  ||||||     
T  48915284 cattggtgccattgatacttttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattcattcatca--ttctctc 48915187  T
Q  326 atctaaaatgaacatatatcatcaatagcaccaaaaaactatggcacccaaatacttccc 385  Q
    ||||||||||||| ||| ||| ||||  ||| ||||||||||||||||||| || |||||    
T  48915186 atctaaaatgaacctatgtcaccaatgtcacaaaaaaactatggcacccaagtatttccc 48915127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 244 - 391
Target Start/End: Complemental strand, 48915467 - 48915320
Alignment:
Q  244 ttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatgaacatata 343  Q
    |||||||| |||| |||||||| ||||  ||| ||||| ||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||||| |||     
T  48915467 ttttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattcattcatcattctctctcatctaaaatgaacttatg 48915368  T
Q  344 tcatcaatagcaccaaaaaactatggcacccaaatacttcccattttt 391  Q
    ||| ||||  ||| ||||||||||||||||||| || ||||| |||||    
T  48915367 tcaccaatgtcacaaaaaaactatggcacccaagtatttccccttttt 48915320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 228 - 385
Target Start/End: Complemental strand, 50539835 - 50539678
Alignment:
Q  228 ttggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaat 327  Q
    ||||||| ||||| || ||||||| |||| |||||||| ||||  ||| ||| |||| |||||||||||||||||| ||  |||||||||| |||||  |    
T  50539835 ttggtgttattgacacctttgtgtctatctctctcttaacaactcattctcttttatttaaataatttattttaatcatctattcatcattatctctctt 50539736  T
Q  328 ctaaaatgaacatatatcatcaatagcaccaaaaaactatggcacccaaatacttccc 385  Q
    ||||||||||| ||| ||| ||||  |||||| |||||||||||||||| || |||||    
T  50539735 ctaaaatgaacttatgtcaccaatgacaccaataaactatggcacccaagtatttccc 50539678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 228 - 386
Target Start/End: Original strand, 26478546 - 26478704
Alignment:
Q  228 ttggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaat 327  Q
    |||||||||||| ||| ||||||| ||||  ||| ||| |||   ||||||| | || ||||| |||||||||||| |||||||||||||| ||||| ||    
T  26478546 ttggtgtcattggtacctttgtgtctatctttcttttaacaattcattatctttcatttaaatgatttattttaattattcattcatcattctctctcat 26478645  T
Q  328 ctaaaatgaacatatatcatcaatagcaccaaaaaactatggcacccaaatacttccca 386  Q
    ||||||| ||| | | ||| ||||| ||| ||||||||||| ||  |||||| ||||||    
T  26478646 ctaaaattaacctttgtcaccaataacactaaaaaactatgacattcaaatatttccca 26478704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 228 - 385
Target Start/End: Complemental strand, 19456417 - 19456261
Alignment:
Q  228 ttggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaat 327  Q
    ||||||||||||  || ||||||| |||| || ||||| |||   ||| ||||| ||||||||||||||||||||| ||  |||||||||| ||||| ||    
T  19456417 ttggtgtcattggcacctttgtgtctatctctttcttaacaattcattctctctcatctaaataatttattttaatcatctattcatcattctctctcat 19456318  T
Q  328 ctaaaatgaacatatatcatcaatagcaccaaaaaactatggcacccaaatacttccc 385  Q
    ||||||||||  ||| ||| ||||  |||| |||| ||||||||||||| || |||||    
T  19456317 ctaaaatgaatctatgtcaccaatgacacc-aaaagctatggcacccaagtatttccc 19456261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 337
Target Start/End: Original strand, 24671140 - 24671249
Alignment:
Q  228 ttggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaat 327  Q
    |||||||||||||||| ||||| |  |||  ||||||| | ||  ||| ||||| || |||||||||||||||||| |||||||||||| | ||||| ||    
T  24671140 ttggtgtcattgatacctttgtttccatctttctcttaaccactcattctctctcatttaaataatttattttaatcattcattcatcactctctctcat 24671239  T
Q  328 ctaaaatgaa 337  Q
    ||||||||||    
T  24671240 ctaaaatgaa 24671249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 20717165 - 20717120
Alignment:
Q  277 tctcttatctaaataatttattttaataattcattcatcattttct 322  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||    
T  20717165 tctctaatctaaataatttattttaataatttattcatcattttct 20717120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 308
Target Start/End: Complemental strand, 27032415 - 27032326
Alignment:
Q  219 ttggtatcattggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 308  Q
    ||||| ||||||||||||| | ||  ||||||| |||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| ||||    
T  27032415 ttggtgtcattggtgtcatgggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 27032326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 333
Target Start/End: Original strand, 49177424 - 49177483
Alignment:
Q  273 attatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaa 333  Q
    ||||||| | ||||||||||||||||||||| ||||| |||||||||||||| ||||||||    
T  49177424 attatctttcatctaaataatttattttaatcattca-tcatcattttctctcatctaaaa 49177483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 313 - 376
Target Start/End: Original strand, 48843434 - 48843497
Alignment:
Q  313 atcattttctctaatctaaaatgaacatatatcatcaatagcaccaaaaaactatggcacccaa 376  Q
    |||||| ||| | ||||||||||||| ||| ||| |||| ||||||||||||||||||||||||    
T  48843434 atcattctctttcatctaaaatgaacctatgtcaccaatggcaccaaaaaactatggcacccaa 48843497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 323
Target Start/End: Complemental strand, 5398080 - 5398034
Alignment:
Q  277 tctcttatctaaataatttattttaataattcattcatcattttctc 323  Q
    ||||| ||||||||| |||||||||||||||||||||||||| ||||    
T  5398080 tctctcatctaaatagtttattttaataattcattcatcattctctc 5398034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 374
Target Start/End: Original strand, 27907685 - 27907822
Alignment:
Q  226 cattggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctcta 325  Q
    |||||||||||| | ||  ||||||| |||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| ||||           ||| |     
T  27907685 cattggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc-----------tctttc 27907773  T
Q  326 atctaaaatgaacatatatcatcaatagcaccaaaaaactatggcaccc 374  Q
    ||||||||||||| ||| ||| ||||  |||||||||||||||||||||    
T  27907774 atctaaaatgaacctatgtcaccaatgacaccaaaaaactatggcaccc 27907822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 338
Target Start/End: Original strand, 49177278 - 49177337
Alignment:
Q  277 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatgaac 338  Q
    ||||| ||||||||||||||||||||||||| |||||  || |||||| |||||||||||||    
T  49177278 tctctcatctaaataatttattttaataatttattca--atattctctcatctaaaatgaac 49177337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 19431448 - 19431391
Alignment:
Q  277 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaat 334  Q
    ||||| ||||||||||||||||||||| |||||| ||||||| | ||| |||||||||    
T  19431448 tctctcatctaaataatttattttaatcattcatccatcattctgtctcatctaaaat 19431391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 388
Target Start/End: Original strand, 51748626 - 51748685
Alignment:
Q  329 taaaatgaacatatatcatcaatagcaccaaaaaactatggcacccaaatacttcccatt 388  Q
    |||||||||  ||| |||||||| ||||||||||||||||||| |||| || ||||||||    
T  51748626 taaaatgaatctatgtcatcaatggcaccaaaaaactatggcatccaagtatttcccatt 51748685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 338
Target Start/End: Original strand, 17923859 - 17923920
Alignment:
Q  277 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatgaac 338  Q
    ||||| ||||||||||||||||||||| |||||| || |||| ||||| ||  |||||||||    
T  17923859 tctctcatctaaataatttattttaattattcatccaacattctctctcataaaaaatgaac 17923920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 324
Target Start/End: Original strand, 25586867 - 25586916
Alignment:
Q  275 tatctcttatctaaataatttattttaataattcattcatcattttctct 324  Q
    |||||||||| | |||||||||||||||  ||||||| ||||||||||||    
T  25586867 tatctcttatttgaataatttattttaaatattcattgatcattttctct 25586916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 3950343 - 3950295
Alignment:
Q  287 aaataatttattttaataattcattcatcattttctctaatctaaaatg 335  Q
    ||||||||||||||||| ||||||  |||||| ||||| ||||||||||    
T  3950343 aaataatttattttaatcattcatcgatcattctctctcatctaaaatg 3950295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 235 - 386
Target Start/End: Complemental strand, 2628536 - 2628385
Alignment:
Q  235 cattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaat 334  Q
    ||||||||||||||||| |||| |||||||| ||||  ||| ||||| ||||||||| ||||||||||| ||| |||||||||| ||||| |||||||||    
T  2628536 cattgatacttttgtgtctatctctctcttaacaactcattctctctcatctaaatagtttattttaatcatttattcatcattctctctcatctaaaat 2628437  T
Q  335 gaacatatatcatcaatagcaccaaaaaactatggcacccaaatacttccca 386  Q
    |||| ||| ||| |||| ||||||||||||||||||| |||| || ||||||    
T  2628436 gaacttatgtcaccaatggcaccaaaaaactatggcatccaagtatttccca 2628385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 228 - 379
Target Start/End: Complemental strand, 9488877 - 9488725
Alignment:
Q  228 ttggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcatt-ttctctaa 326  Q
    |||||| ||||||||| ||||||| |||| |||||||| ||||  |||  || || |||||||||||||||||||| |||||||||||||| | |||| |    
T  9488877 ttggtgccattgatacctttgtgtatatctctctcttaacaactcattccctattctctaaataatttattttaatcattcattcatcattctcctctca 9488778  T
Q  327 tctaaaatgaacatatatcatcaatagcaccaaaaaactatggcacccaaata 379  Q
    |||||||||||| ||| ||||||||| |||||||||| |||||||||||||||    
T  9488777 tctaaaatgaacttatgtcatcaataacaccaaaaaattatggcacccaaata 9488725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 277 - 379
Target Start/End: Complemental strand, 32279352 - 32279250
Alignment:
Q  277 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatgaacatatatcatcaatagcaccaaaaaactatggcacccaa 376  Q
    ||||| || |||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||| ||| | ||  ||||||||||||||| || ||||    
T  32279352 tctctcatttaaataatttattttaattattcattcatcattttctctcatctaaaatgaacctatgtcaccgatgacaccaaaaaactatgacatccaa 32279253  T
Q  377 ata 379  Q
    |||    
T  32279252 ata 32279250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 245 - 376
Target Start/End: Complemental strand, 16876806 - 16876686
Alignment:
Q  245 tttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatgaacatatat 344  Q
    ||||||| |||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| ||||           ||| | ||||||||||||| |||||    
T  16876806 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc-----------tctttcatctaaaatgaacttatat 16876718  T
Q  345 catcaatagcaccaaaaaactatggcacccaa 376  Q
    ||||||| ||||||||||||||||||||||||    
T  16876717 catcaatggcaccaaaaaactatggcacccaa 16876686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 245 - 385
Target Start/End: Complemental strand, 46425407 - 46425278
Alignment:
Q  245 tttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatgaacatatat 344  Q
    ||||||| |||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| ||||           ||| | ||||||||||||| ||| |    
T  46425407 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc-----------tctttcatctaaaatgaacctatgt 46425319  T
Q  345 catcaatagcaccaaaaaactatggcacccaaatacttccc 385  Q
    || |||| |||||||||||||||||||||||| || |||||    
T  46425318 caccaatggcaccaaaaaactatggcacccaagtatttccc 46425278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 385
Target Start/End: Original strand, 34328163 - 34328235
Alignment:
Q  313 atcattttctctaatctaaaatgaacatatatcatcaatagcaccaaaaaactatggcacccaaatacttccc 385  Q
    |||||| ||| | ||||||||||||| ||| ||| |||| |||||||||||||||||||||||| || |||||    
T  34328163 atcattctctttcatctaaaatgaacctatgtcaccaatggcaccaaaaaactatggcacccaagtatttccc 34328235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 318
Target Start/End: Original strand, 33747989 - 33748030
Alignment:
Q  277 tctcttatctaaataatttattttaataattcattcatcatt 318  Q
    |||||||||||||||||||||||||||  |||||||||||||    
T  33747989 tctcttatctaaataatttattttaattgttcattcatcatt 33748030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 338
Target Start/End: Complemental strand, 37685248 - 37685187
Alignment:
Q  277 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatgaac 338  Q
    ||||| ||||||||||||||||||||| |||||| || |||| |||||  ||||||||||||    
T  37685248 tctctcatctaaataatttattttaatcattcatccaacattctctctcgtctaaaatgaac 37685187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 379
Target Start/End: Complemental strand, 23185992 - 23185870
Alignment:
Q  245 tttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatgaacatatat 344  Q
    ||||||| |||| |||||||| ||||  ||| ||||| |||||||||||||||||||           |||||| ||| | ||||||||||||| ||| |    
T  23185992 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttatttta-----------atcattctctttcatctaaaatgaac-tatgt 23185905  T
Q  345 catcaatagcaccaaaaaactatggcacccaaata 379  Q
    || |||| |||| ||||||||||||||||||||||    
T  23185904 caccaatggcactaaaaaactatggcacccaaata 23185870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 18868017 - 18867954
Alignment:
Q  245 tttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 308  Q
    ||||||| |||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| ||||    
T  18868017 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 18867954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 337
Target Start/End: Complemental strand, 11369106 - 11369053
Alignment:
Q  284 tctaaataatttattttaataattcattcatcattttctctaatctaaaatgaa 337  Q
    |||||||||||||||||||| ||| || || |||| ||||| ||||||||||||    
T  11369106 tctaaataatttattttaatcatttatccaacattctctctcatctaaaatgaa 11369053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 314
Target Start/End: Original strand, 15667897 - 15667938
Alignment:
Q  273 attatctcttatctaaataatttattttaataattcattcat 314  Q
    ||||||||| || |||||||||||||||||| ||||||||||    
T  15667897 attatctctcatttaaataatttattttaatcattcattcat 15667938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 334
Target Start/End: Original strand, 32204771 - 32204832
Alignment:
Q  273 attatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaat 334  Q
    ||||||||| || |||||||||||||||||| ||| ||  ||||| |||||| |||||||||    
T  32204771 attatctctcatataaataatttattttaatcatttatctatcatcttctctcatctaaaat 32204832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 43368538 - 43368497
Alignment:
Q  283 atctaaataatttattttaataattcattcatcattttctct 324  Q
    ||||||||||||||||||||| |||||| ||||||| |||||    
T  43368538 atctaaataatttattttaatcattcatccatcattctctct 43368497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 303
Target Start/End: Original strand, 34328091 - 34328164
Alignment:
Q  228 ttggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaat 303  Q
    |||||||||| ||||  ||||||| ||||  ||||||| ||||  ||| ||||| |||||||||||||||||||||    
T  34328091 ttggtgtcatagataactttgtgtctatc--tctcttaacaactcattctctctcatctaaataatttattttaat 34328164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 228 - 376
Target Start/End: Original strand, 10688592 - 10688740
Alignment:
Q  228 ttggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaat 327  Q
    |||||| ||||| ||| ||||||| |||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| |||||||||||||| ||||| ||    
T  10688592 ttggtgccattggtacctttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattcattcatcattctctctcat 10688691  T
Q  328 ctaaaatgaacatatatcatcaatagcaccaaaaaactatggcacccaa 376  Q
    ||||||||||| ||| ||||||||   ||||||||||||| ||||||||    
T  10688692 ctaaaatgaacttatgtcatcaatgataccaaaaaactatagcacccaa 10688740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 276 - 385
Target Start/End: Original strand, 47548868 - 47548977
Alignment:
Q  276 atctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatgaacatatatcatcaatagcaccaaaaaactatggcaccca 375  Q
    |||||| ||||||||||||||||||||| || |||||| |||| ||||| ||||||||||||| ||| | | |||| |||||||||||| ||||||||||    
T  47548868 atctctcatctaaataatttattttaatcatccattcaacattctctctcatctaaaatgaacctatgttaccaatggcaccaaaaaaccatggcaccca 47548967  T
Q  376 aatacttccc 385  Q
    | || |||||    
T  47548968 agtatttccc 47548977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 376
Target Start/End: Original strand, 50700003 - 50700144
Alignment:
Q  228 ttggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaat 327  Q
    |||||||||||| ||| |||||||  ||| ||||||||   ||| ||| |||||  |||||||||||||||||||| ||| ||||||||  |||||| ||    
T  50700003 ttggtgtcattggtacatttgtgt--atctctctctta---acacattctctctcgtctaaataatttattttaatcatttattcatca--ttctctcat 50700095  T
Q  328 ctaaaatgaacatatatcatcaatagcaccaaaaaactatggcacccaa 376  Q
    ||||||||||| ||| ||| |||| |||| |||||||||| ||| ||||    
T  50700096 ctaaaatgaacttatgtcaccaatggcactaaaaaactatagcatccaa 50700144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 277 - 351
Target Start/End: Complemental strand, 46348450 - 46348376
Alignment:
Q  277 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatgaacatatatcatcaat 351  Q
    ||||| || |||||| ||||| |||||||||||||||||||| ||||| |||||||||||||  |||||||||||    
T  46348450 tctctcatttaaatagtttatcttaataattcattcatcattctctctcatctaaaatgaaccaatatcatcaat 46348376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 245 - 385
Target Start/End: Original strand, 4037142 - 4037271
Alignment:
Q  245 tttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatgaacatatat 344  Q
    ||||||| |||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| ||||           ||| | ||||||||||||| ||| |    
T  4037142 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc-----------tctttcatctaaaatgaacctatgt 4037230  T
Q  345 catcaatagcaccaaaaaactatggcacccaaatacttccc 385  Q
    || |||| |||||||||||||||||||||||| || |||||    
T  4037231 caccaatggcaccaaaaaactatggcacccaagtatttccc 4037271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 308
Target Start/End: Original strand, 49279464 - 49279553
Alignment:
Q  219 ttggtatcattggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 308  Q
    ||||| ||||||||||||| | ||  ||||||| |||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| ||||    
T  49279464 ttggtgtcattggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 49279553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 338
Target Start/End: Complemental strand, 39485528 - 39485467
Alignment:
Q  277 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatgaac 338  Q
    ||||| ||||||||||||||||||||| |||||| || | || ||||| |||||||||||||    
T  39485528 tctctcatctaaataatttattttaatcattcatccaaccttctctctcatctaaaatgaac 39485467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 39488539 - 39488495
Alignment:
Q  277 tctcttatctaaataatttattttaataattcattcatcattttc 321  Q
    |||||| | |||||||||||||||||| |||||||||||||||||    
T  39488539 tctcttttttaaataatttattttaattattcattcatcattttc 39488495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 11233507 - 11233570
Alignment:
Q  245 tttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 308  Q
    ||||||| |||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| ||||    
T  11233507 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 11233570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 376
Target Start/End: Complemental strand, 39350815 - 39350752
Alignment:
Q  313 atcattttctctaatctaaaatgaacatatatcatcaatagcaccaaaaaactatggcacccaa 376  Q
    |||||| ||| | ||||||||||||| |||  || |||| ||||||||||||||||||||||||    
T  39350815 atcattctctttcatctaaaatgaacctatggcaccaatggcaccaaaaaactatggcacccaa 39350752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 373
Target Start/End: Complemental strand, 34272461 - 34272415
Alignment:
Q  327 tctaaaatgaacatatatcatcaatagcaccaaaaaactatggcacc 373  Q
    |||||||||||| ||| ||| ||||| ||||||||||||||||||||    
T  34272461 tctaaaatgaacctatgtcaccaataacaccaaaaaactatggcacc 34272415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 318
Target Start/End: Complemental strand, 42467008 - 42466974
Alignment:
Q  284 tctaaataatttattttaataattcattcatcatt 318  Q
    |||||||||||||||||||| ||||||||||||||    
T  42467008 tctaaataatttattttaattattcattcatcatt 42466974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 334
Target Start/End: Original strand, 16278813 - 16278862
Alignment:
Q  285 ctaaataatttattttaataattcattcatcattttctctaatctaaaat 334  Q
    ||||||||||||||||||| |||||| ||||||| | ||| |||||||||    
T  16278813 ctaaataatttattttaattattcatccatcattctttcttatctaaaat 16278862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 385
Target Start/End: Original strand, 39994249 - 39994321
Alignment:
Q  313 atcattttctctaatctaaaatgaacatatatcatcaatagcaccaaaaaactatggcacccaaatacttccc 385  Q
    |||||| ||| | ||||||||| ||| ||| ||| ||||  ||||||||||||||||||||||| || |||||    
T  39994249 atcattctctttcatctaaaattaacttatgtcaccaatgacaccaaaaaactatggcacccaagtatttccc 39994321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 258 - 386
Target Start/End: Original strand, 34928806 - 34928936
Alignment:
Q  258 ctctcttaccaacatattatctctt--atctaaataatttattttaataattcattcatcattttctctaatctaaaatgaacatatatcatcaatagca 355  Q
    |||||||| |||| |||| ||||||  ||||||||||||||||||||| ||||||| |||||| ||||| ||||||||||||||||| ||||||||  ||    
T  34928806 ctctcttaacaacttattctctctttcatctaaataatttattttaatcattcatttatcattctctctcatctaaaatgaacatatgtcatcaatgaca 34928905  T
Q  356 ccaaaaaactatggcacccaaatacttccca 386  Q
    | ||||||||||||||||||| || ||||||    
T  34928906 ctaaaaaactatggcacccaagtatttccca 34928936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 263 - 373
Target Start/End: Complemental strand, 27554995 - 27554885
Alignment:
Q  263 ttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatgaacatatatcatcaatagcaccaaaaa 362  Q
    ||||||||||||| ||||| ||||||||||| ||||||||| ||| |||||||||||||||| ||||||||| ||| |||||||||||| |||  |||||    
T  27554995 ttaccaacatattttctctcatctaaataatctattttaattatttattcatcattttctctcatctaaaataaacttatatcatcaatggcagtaaaaa 27554896  T
Q  363 actatggcacc 373  Q
    |||||||||||    
T  27554895 actatggcacc 27554885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 234 - 379
Target Start/End: Original strand, 22658818 - 22658962
Alignment:
Q  234 tcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaa 333  Q
    |||||||||||||||| |||||| |||| ||| ||||||| | | | | || |||||||||||||||||| |||||||||||||| ||| | ||||||||    
T  22658818 tcattgatacttttgt-tttatctctctgttagcaacatactttttttcatttaaataatttattttaatcattcattcatcattctctttcatctaaaa 22658916  T
Q  334 tgaacatatatcatcaatagcaccaaaaaactatggcacccaaata 379  Q
    ||||| ||| | | |||| ||||||||||||||||||||| |||||    
T  22658917 tgaacttatgttaccaatcgcaccaaaaaactatggcacctaaata 22658962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 240 - 376
Target Start/End: Original strand, 2651618 - 2651745
Alignment:
Q  240 atacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatgaaca 339  Q
    ||||||||||||||||| |||||||||||||||||| | ||| ||||||||||||||||||||| ||||||||||           |||||||||||||     
T  2651618 atacttttgtgtttatctctctcttaccaacatattctatctcatctaaataatttattttaatcattcattcat---------acatctaaaatgaact 2651708  T
Q  340 tatatcatcaatagcaccaaaaaactatggcacccaa 376  Q
    ||| ||| |||| ||||||||||||||||||||||||    
T  2651709 tatgtcaccaatggcaccaaaaaactatggcacccaa 2651745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 284 - 368
Target Start/End: Complemental strand, 14151993 - 14151909
Alignment:
Q  284 tctaaataatttattttaataattcattcatcattttctctaatctaaaatgaacatatatcatcaatagcaccaaaaaactatg 368  Q
    |||||||||||||||||||| |||||||||| ||| ||||| ||||||||||||| ||| ||||||||  || ||||||||||||    
T  14151993 tctaaataatttattttaatcattcattcattattatctctcatctaaaatgaacctatgtcatcaatgacatcaaaaaactatg 14151909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 385
Target Start/End: Complemental strand, 37515652 - 37515524
Alignment:
Q  245 tttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatgaacatatat 344  Q
    ||||||| |||| |||||||| ||||  ||||||| | ||||||||||||||||||||| ||||           ||| | ||||||||||||| ||| |    
T  37515652 tttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc-----------tcttttatctaaaatgaacttatgt 37515564  T
Q  345 catcaatagcaccaaaaaactatggcacccaaatacttccc 385  Q
    |||||||| |||| ||||||||||||||||| ||| |||||    
T  37515563 catcaataacacc-aaaaactatggcacccagatatttccc 37515524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 273 - 338
Target Start/End: Complemental strand, 18267916 - 18267851
Alignment:
Q  273 attatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatgaac 338  Q
    ||||||| |||| |||||||||||||||||| ||| || ||||||| ||||| |||||||| ||||    
T  18267916 attatcttttatttaaataatttattttaattattaatccatcattctctcttatctaaaacgaac 18267851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 334
Target Start/End: Original strand, 33953161 - 33953218
Alignment:
Q  277 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaat 334  Q
    ||||| ||||||||||||||||||||| |||||| || |||| ||||| |||||||||    
T  33953161 tctctcatctaaataatttattttaattattcatccaccattctctctcatctaaaat 33953218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 385
Target Start/End: Original strand, 37480340 - 37480412
Alignment:
Q  313 atcattttctctaatctaaaatgaacatatatcatcaatagcaccaaaaaactatggcacccaaatacttccc 385  Q
    |||||||||| | ||||||||||||| ||| ||| ||||  |||||||||||||| |||||||| || |||||    
T  37480340 atcattttctttcatctaaaatgaacttatgtcaccaatgacaccaaaaaactatagcacccaagtatttccc 37480412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 324
Target Start/End: Complemental strand, 18623644 - 18623597
Alignment:
Q  277 tctcttatctaaataatttattttaataattcattcatcattttctct 324  Q
    ||||||||||||||||||||||||||| ||||||  |||||| |||||    
T  18623644 tctcttatctaaataatttattttaatcattcatctatcattctctct 18623597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 387
Target Start/End: Original strand, 22473601 - 22473667
Alignment:
Q  320 tctctaatctaaaatgaacatatatcatcaatagcaccaaaaaactatggcacccaaatacttcccat 387  Q
    ||||| ||||||||||||||||| ||| || | || ||||||||||||||||||||| || |||||||    
T  22473601 tctctcatctaaaatgaacatatgtcacca-tggcgccaaaaaactatggcacccaagtatttcccat 22473667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 335
Target Start/End: Original strand, 22653513 - 22653571
Alignment:
Q  277 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatg 335  Q
    ||||||||||||||||| ||||||||| |||||| ||| ||| | ||| ||||||||||    
T  22653513 tctcttatctaaataatctattttaatcattcatccattattctttctcatctaaaatg 22653571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 334
Target Start/End: Original strand, 19824617 - 19824674
Alignment:
Q  277 tctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaat 334  Q
    ||||| ||||||||||||||||||||| ||||||  | |||| ||||| |||||||||    
T  19824617 tctctcatctaaataatttattttaatcattcatctaacattctctctcatctaaaat 19824674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 334
Target Start/End: Complemental strand, 14281862 - 14281810
Alignment:
Q  283 atctaaataatttattttaata-attcattcatcattttctctaatctaaaat 334  Q
    |||||||||||||||||||||| ||||||  |||||| ||||| |||||||||    
T  14281862 atctaaataatttattttaatacattcatctatcattctctctcatctaaaat 14281810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 245 - 385
Target Start/End: Original strand, 9928262 - 9928391
Alignment:
Q  245 tttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaatgaacatatat 344  Q
    ||||||| |||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| ||||           ||| | ||||||||||||| ||| |    
T  9928262 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc-----------tctttcatctaaaatgaacctatgt 9928350  T
Q  345 catcaatagcaccaaaaaactatggcacccaaatacttccc 385  Q
    || |||| |||||||||||||||||||||||| || |||||    
T  9928351 caccaatggcaccaaaaaactatggcacccaagtatttccc 9928391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 272 - 334
Target Start/End: Original strand, 26847168 - 26847230
Alignment:
Q  272 tattatctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaat 334  Q
    |||||||||||||||||||||||||||||| | ||||||  |||||| ||||| |||||||||    
T  26847168 tattatctcttatctaaataatttattttactcattcatctatcattctctctcatctaaaat 26847230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 457683 - 457739
Alignment:
Q  278 ctcttatctaaataatttattttaataattcattcatcattttctctaatctaaaat 334  Q
    |||| ||||||||||||||||||||| |||||| ||||||| ||||| |||||||||    
T  457683 ctctcatctaaataatttattttaatcattcatccatcattctctctcatctaaaat 457739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 308
Target Start/End: Original strand, 31743843 - 31743922
Alignment:
Q  227 attggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 308  Q
    ||||||||||| |||| |||||||| |||| |||| ||| |||| |||| ||||  ||||||||||||||||||||| ||||    
T  31743843 attggtgtcatagatagttttgtgtctatctctcttttaacaacttattctctc--atctaaataatttattttaatcattc 31743922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 22469757 - 22469818
Alignment:
Q  313 atcattttctctaatctaaaatgaacatatatcatcaatagcaccaaaaaactatggcaccc 374  Q
    |||||| ||| | ||||||||||||| ||| ||| |||| ||||||||||||||||||||||    
T  22469757 atcattctctttcatctaaaatgaacctatgtcaccaatggcaccaaaaaactatggcaccc 22469818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 334
Target Start/End: Original strand, 24226101 - 24226148
Alignment:
Q  287 aaataatttattttaataattcattcatcattttctctaatctaaaat 334  Q
    ||||||||||||||||| ||||||  |||||||||||| |||||||||    
T  24226101 aaataatttattttaatcattcatctatcattttctctcatctaaaat 24226148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 9549369 - 9549436
Alignment:
Q  245 tttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaataattcattcat 314  Q
    ||||||||||||  ||||||| ||||  ||| ||||| || |||||||||||||||||| ||||||||||    
T  9549369 tttgtgtttatc--tctcttaacaactcattctctctaatttaaataatttattttaatcattcattcat 9549436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 308
Target Start/End: Original strand, 7506639 - 7506696
Alignment:
Q  251 tttatccctctcttaccaacatattatctcttatctaaataatttattttaataattc 308  Q
    |||||| |||||||| ||||  ||| ||||| ||||||||||||||||||||| ||||    
T  7506639 tttatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 7506696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 22469674 - 22469758
Alignment:
Q  219 ttggtatcattggtgtcattgatacttttgtgtttatccctctcttaccaacatattatctcttatctaaataatttattttaat 303  Q
    ||||| ||||||||| ||| | ||  ||||||| |||| || ||||| ||||  ||| ||||| |||||||||||||||||||||    
T  22469674 ttggtgtcattggtgccataggtaactttgtgtctatctctttcttaacaactcattctctctcatctaaataatttattttaat 22469758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 313 - 376
Target Start/End: Original strand, 15149 - 15212
Alignment:
Q  313 atcattttctctaatctaaaatgaacatatatcatcaatagcaccaaaaaactatggcacccaa 376  Q
    |||||| ||| | ||||||||||||||||| ||| |||| ||||||||||| ||||||||||||    
T  15149 atcattatctttcatctaaaatgaacatatgtcaccaatggcaccaaaaaattatggcacccaa 15212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 273 - 314
Target Start/End: Original strand, 20314 - 20355
Alignment:
Q  273 attatctcttatctaaataatttattttaataattcattcat 314  Q
    ||||||||| ||||||||||||||||||||| ||||||||||    
T  20314 attatctctcatctaaataatttattttaatcattcattcat 20355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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