View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20478_high_4 (Length: 453)
Name: NF20478_high_4
Description: NF20478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20478_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 58 - 433
Target Start/End: Original strand, 22328188 - 22328564
Alignment:
| Q |
58 |
aacaaatgaaatgtttcaccggcaatctccggtggacaacaatccagtaaccgcttctaccagtcaccgctcagcggcattagagcgaagaatgccacca |
157 |
Q |
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| T |
22328188 |
aacaaatgaaatgtttcaccggcaatctccggtggacaacaatccagtaaccgcttctaccagtcaccgctcagcggcattagagcgaagaatgccacca |
22328287 |
T |
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| Q |
158 |
cacgaacaacaatttccttcccaacaacaacagttggagatagactacaacagtagtagcagtgggaaacatggttttcttcaaggctcgttagacactg |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22328288 |
cacgaacaacaatttccttcccaacaacaacagttggagatagactacaacagtagtagcagtgggaaacatggttttcttcaaggctcgttagacactg |
22328387 |
T |
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| Q |
258 |
acattgcggatactattaagtctttctttccagttgaaactccc-ccacatcttttcacagttatcaacagccgccggatttactctctcgaacggcggc |
356 |
Q |
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||||||||||||||||||||||||| || ||||||||||| ||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
22328388 |
acattgcggatactattaagtcttttttcccagttgaaacgcccaccacatcttttcacaattatcaacaaccgccggatttactctctcgaacggcggc |
22328487 |
T |
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| Q |
357 |
aaccaccaagcagcagcatctccgtctcttattaaaatcttttcaagatcctattagacttcagagccgccatgaca |
433 |
Q |
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||||||| ||||||| |||||||||||| ||| ||||||||||||||||||||| |||||||||| |||||||| |
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| T |
22328488 |
aaccacccagcagcaagatctccgtctctcattgcaatcttttcaagatcctattatgcttcagagccaccatgaca |
22328564 |
T |
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