View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20478_low_1 (Length: 596)
Name: NF20478_low_1
Description: NF20478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20478_low_1 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-144; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 313 - 596
Target Start/End: Original strand, 29620666 - 29620949
Alignment:
| Q |
313 |
ctgttggccatattgtcattaccgcagcgaatgtactgcaagccctgaaataaataagatgaatgagtgtctcttcttttaagcatctccttgaaaaagt |
412 |
Q |
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| T |
29620666 |
ctgttggccatattgtcattaccgcagcgaatgtcctgcaagccctgaaataaataagatgaatgagtgtctcttcttttaagcatctccttgaaaaagt |
29620765 |
T |
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| Q |
413 |
tgtgcaatcccaactacaagttcataatcgtgtacgtgtactccatccggtcagtcttataagctgatattccatttgcaagtttattgaataactgacg |
512 |
Q |
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| T |
29620766 |
tgtgcaatcctaactacaagttcaaaatcgtgtacatgtactccatccggtcagtcttataagcagatattccatttgcaagtttattgaataactgacg |
29620865 |
T |
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| Q |
513 |
tatctatctgaaccataatatagtctaggtacataagttattcaatgaatcttaaaatgaaatataagcagatatttcattttc |
596 |
Q |
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| T |
29620866 |
tatctatctgaaccataatatagtctaggtacataagttattcaatgaatcttaaaatgaaatataagccgatatttcattttc |
29620949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 29620042 - 29620365
Alignment:
| Q |
1 |
aataggttactctgaaattctgaagaatagaatata--caatgatgaaaaagatgctatctattcataaatagataaccgtgtaaaagaaaaagagaaca |
98 |
Q |
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| T |
29620042 |
aataggttcctctgaaattcagaagaatagaatatatacactgataaagaagatactatctattcataaatatataaccgtgtaaaataaaaagagaaca |
29620141 |
T |
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| Q |
99 |
agctatatggaatttgagagaacaacttgcacatcttcaagatagtcttctcttgcatttttcaccaacattagagataatagccagaagagagatgaat |
198 |
Q |
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| T |
29620142 |
agctatatggaatttgagagagaaacttgcacatcttcaagatagtcctctcttgcatttttcaccaacattagggataatagccagaagagagatgagt |
29620241 |
T |
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| Q |
199 |
taagactcaagaatgctgcactacccatgagacctgtcttggcagtagggcagtcaggcttaacagaagttgtgatgctataggaattggatttccagag |
298 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29620242 |
taaggctcaagaatgctgcactacccatgagacctgtcttggcagtagggcagtcaggcttaacagaagttctgatgctataggaattggatttccagag |
29620341 |
T |
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| Q |
299 |
atattgttctgtcactgttggcca |
322 |
Q |
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| T |
29620342 |
atattgttctgtcactgttggcca |
29620365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 470 - 577
Target Start/End: Original strand, 29620928 - 29621036
Alignment:
| Q |
470 |
tataagctgatattccatttgcaagtttattgaataactgacgtatctatctg-aaccataatatagtctaggtacataagttattcaatgaatcttaaa |
568 |
Q |
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||||||| |||||| ||||| |||||||||||||||| | ||||||||||||| ||| ||||||||||||| || ||||||||||||||||| |||||| |
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| T |
29620928 |
tataagccgatatttcattttcaagtttattgaataattaacgtatctatctgaaactataatatagtctaaatatataagttattcaatgaaccttaaa |
29621027 |
T |
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| Q |
569 |
atgaaatat |
577 |
Q |
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| T |
29621028 |
atgaaatat |
29621036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 132 - 247
Target Start/End: Complemental strand, 1792788 - 1792671
Alignment:
| Q |
132 |
tcttcaagatagtcttctcttgcatttttcaccaacattagagataatagccagaagagag--atgaattaagactcaagaatgctgcactacccatgag |
229 |
Q |
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|||| ||||||||| |||||| ||||||| |||| |||||| ||||| ||||| || | || |||||||||||| ||||||||| |||| |||||||| |
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| T |
1792788 |
tcttgaagatagtcctctcttacattttttaccagcattagggataaaagccaaaataaagtgatgaattaagacacaagaatgccccactgcccatgag |
1792689 |
T |
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| Q |
230 |
acctgtcttggcagtagg |
247 |
Q |
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| T |
1792688 |
accagtcttggcagtagg |
1792671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 369
Target Start/End: Complemental strand, 1792606 - 1792543
Alignment:
| Q |
306 |
tctgtcactgttggccatattgtcattaccgcagcgaatgtactgcaagccctgaaataaataa |
369 |
Q |
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||||||||||||||||||| ||||||||| |||| |||| ||||||||| ||||||||||||| |
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| T |
1792606 |
tctgtcactgttggccataatgtcattacaccagccaatgcactgcaagctctgaaataaataa |
1792543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 527 - 563
Target Start/End: Complemental strand, 8920526 - 8920490
Alignment:
| Q |
527 |
ataatatagtctaggtacataagttattcaatgaatc |
563 |
Q |
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| T |
8920526 |
ataatatagtcaaggtacatcagttattcaatgaatc |
8920490 |
T |
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