View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20478_low_3 (Length: 473)
Name: NF20478_low_3
Description: NF20478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20478_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 18 - 465
Target Start/End: Original strand, 28471066 - 28471513
Alignment:
| Q |
18 |
ctaagatccttgtaaatatccatgcatctctctctttcaccatcttcactctctgagcagctaagaaacaactcatcaacaaagcatataacaccatttt |
117 |
Q |
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| T |
28471066 |
ctaagacccttgtaaatatccatgcatctctctctttcaccatcttcactctctgagcagctaagaaacaactcatcaacaaagcatataacaccatttt |
28471165 |
T |
|
| Q |
118 |
tatatatttctgaaagaaaattcatttcaactttccctgcaatattcatcttaaccataacaaaatcagcattctccacagtttctttaaaccaagcaac |
217 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28471166 |
tatatatttctgaaagaaacttcatttcaactttccctgcaatattcatcttaaccataacaaaatcagcattctccacagtttctttaaaccaagcaac |
28471265 |
T |
|
| Q |
218 |
caaatcaaactcttcatcttctttcacatctgcttccccgacattaaccttagcttcatccttaaaattctcatttaattctggatgataaacaaatgta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28471266 |
caaatcaaactcttcatcttctttcacatctgcttccccgacattaaccttagcttcatccttaaaattctcatttaattctggatgataaacaaatgta |
28471365 |
T |
|
| Q |
318 |
acacgcggtcctttcacgtgtgacaacataatagaagtgttgtaatgaacaaaataaacattgaaatctttcttatgaattggataagattgtggaaacc |
417 |
Q |
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| T |
28471366 |
acacgcggtcctttcacgtgtgacaacataatagaagtgttgtaatgaacaaaataaacattgaaatctttcttatgaattggataagattgtggaaacc |
28471465 |
T |
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| Q |
418 |
aatcaccaacctcatcttcaacaatattaacataaactaaattcttct |
465 |
Q |
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| T |
28471466 |
aatcaccaacctcatcttcaacaatattaacataaactaaattcttct |
28471513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 403
Target Start/End: Complemental strand, 40806798 - 40806698
Alignment:
| Q |
303 |
tgataaacaaatgtaacacgcggtcctttcacgtgtgacaacataatagaagtgttgtaatgaacaaaataaacattgaaatctttcttatgaattggat |
402 |
Q |
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||||||||||| || | || |||| |||||| | |||||||| |||||||||||||| ||||||||||| ||||||||| |||||| || ||| |||| |
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| T |
40806798 |
tgataaacaaacgtgataccaggtcttttcacataagacaacattatagaagtgttgtagtgaacaaaatacacattgaaagctttctgatcaataggat |
40806699 |
T |
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| Q |
403 |
a |
403 |
Q |
| |
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| T |
40806698 |
a |
40806698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 40806931 - 40806875
Alignment:
| Q |
176 |
aacaaaatcagcattctccacagtttctttaaaccaagcaaccaaatcaaactcttc |
232 |
Q |
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|||||||||||||| | |||||||||||| |||||||||| |||||||||||||| |
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| T |
40806931 |
aacaaaatcagcatattgcacagtttctttgaaccaagcaaggaaatcaaactcttc |
40806875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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