View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20478_low_6 (Length: 261)
Name: NF20478_low_6
Description: NF20478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20478_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 243
Target Start/End: Original strand, 39814632 - 39814863
Alignment:
| Q |
12 |
gcagagagaggaacctcagcaagtgggcccgtacaaggaacaccagcgttattaacaagaacatcgatgcgaccaaatttatccaaaacaatattcacaa |
111 |
Q |
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| T |
39814632 |
gcagagagaggaacctcagcaagtgggcctgtacaaggaacaccagcgttattaacaagaacatcgatgcgaccaaatttatccaaaacagtattcacaa |
39814731 |
T |
|
| Q |
112 |
ctctgttcacgctttcatcggactgaacatcgagttcttgaaggaagaatttagggtcttgatccaaatccgccatggtagaacatgacctgctggttgc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39814732 |
ctctgttcacgctttcatcggactgaacatcgagttcttgaaggaagaatttagggtcttgatccaaatccgccatggtagaacgtgacctgctggttgc |
39814831 |
T |
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| Q |
212 |
aaccacattgcagctgttggctgcgaaggagc |
243 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
39814832 |
aaccacattgcagctgttggctgcgaaggagc |
39814863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 12 - 243
Target Start/End: Original strand, 39818156 - 39818387
Alignment:
| Q |
12 |
gcagagagaggaacctcagcaagtgggcccgtacaaggaacaccagcgttattaacaagaacatcgatgcgaccaaatttatccaaaacaatattcacaa |
111 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |
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| T |
39818156 |
gcagagagaggaatttcagcaagtgggcccacacaaggaacaccagcgttattaacaagaacatcgatacgaccaaatttatccagaacattattcacaa |
39818255 |
T |
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| Q |
112 |
ctctgttcacgctttcatcggactgaacatcgagttcttgaaggaagaatttagggtcttgatccaaatccgccatggtagaacatgacctgctggttgc |
211 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
39818256 |
ctctgttcacgctttcatcagactgaacatcgagttcttgaaggaagaatttagggtcttgatccaaatccgccatggttgaacgtgacctgctggttgc |
39818355 |
T |
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| Q |
212 |
aaccacattgcagctgttggctgcgaaggagc |
243 |
Q |
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||| || |||||||||||||||| ||||||| |
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| T |
39818356 |
aacaactctgcagctgttggctgcaaaggagc |
39818387 |
T |
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