View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20479_high_101 (Length: 232)

Name: NF20479_high_101
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20479_high_101
NF20479_high_101
[»] chr3 (1 HSPs)
chr3 (1-232)||(39991607-39991838)
[»] chr2 (2 HSPs)
chr2 (1-232)||(13809527-13809751)
chr2 (136-231)||(7190907-7191002)
[»] chr4 (1 HSPs)
chr4 (1-229)||(11039465-11039687)
[»] chr1 (4 HSPs)
chr1 (1-232)||(46014804-46015030)
chr1 (62-232)||(2939527-2939696)
chr1 (56-232)||(33332330-33332509)
chr1 (16-60)||(2939686-2939730)
[»] scaffold0029 (1 HSPs)
scaffold0029 (9-232)||(70781-71005)
[»] chr8 (3 HSPs)
chr8 (1-232)||(9311906-9312131)
chr8 (62-232)||(14817577-14817746)
chr8 (62-232)||(14827993-14828162)
[»] chr7 (1 HSPs)
chr7 (61-232)||(45087979-45088151)
[»] chr6 (1 HSPs)
chr6 (61-232)||(17970949-17971118)
[»] chr5 (4 HSPs)
chr5 (1-232)||(19718610-19718845)
chr5 (56-155)||(37966974-37967073)
chr5 (56-140)||(37967608-37967690)
chr5 (152-198)||(37967468-37967514)


Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 39991607 - 39991838
Alignment:
1 tgttttaatccttttcgttaatattatttaaaaaatgttaaggtttacatcatcttcattttcatcttcattcccccttcttcatcatcttgaagctacc 100  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
39991607 tgttttagtccttttcgttaatattattcaaaaaatgttaaggtttacatcatcttcatcttcatcttcattcccccttcttcatcatcttgaagctacc 39991706  T
101 ttcatacaaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccgtaactttattttactcccaagttcttttaattgttgtgaaa 200  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
39991707 ttcataaaaaactcatgagaaaagcccagaattgattcacatgaatgttattcaaactgtaactttattttactcccaagttcttttaattgttgtgaaa 39991806  T
201 gggttaattcaaattcaaaccctctcttcccc 232  Q
    ||||||||||||||||||||||||||||||||    
39991807 gggttaattcaaattcaaaccctctcttcccc 39991838  T

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Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 13809527 - 13809751
Alignment:
1 tgttttaatccttttcgttaatattatttaaaaaatgttaaggtttacatcatcttcattttcatcttcattcccccttcttcatcatcttgaagctacc 100  Q
    ||||||| |||||| ||||||||||||| |||||| |||| |||||||||||||||||      ||||||||||||||||||||||||||| ||||||||    
13809527 tgttttagtcctttccgttaatattattcaaaaaacgttagggtttacatcatcttca------tcttcattcccccttcttcatcatcttcaagctacc 13809620  T
101 ttcatacaaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccgtaactttattttactcccaagttcttttaattgttgtgaaa 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||    
13809621 ttcataaaaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccctaacttta-tttactcccaaattcttttaattgttgtgaaa 13809719  T
201 gggttaattcaaattcaaaccctctcttcccc 232  Q
    ||||||||||||||||||||||||||||||||    
13809720 gggttaattcaaattcaaaccctctcttcccc 13809751  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 7191002 - 7190907
Alignment:
136 ttcacatgaatgttattcaaaccgtaactttattttactcccaagttcttttaattgttgtgaaagggttaattcaaattcaaaccctctcttccc 231  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||    
7191002 ttcacatgaatgttattcaaaccctaactttattttactcccaaattcttttaattgttgtgaaagggttaactcaaattcaaactctctcttccc 7190907  T

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Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 11039687 - 11039465
Alignment:
1 tgttttaatccttttcgttaatattatttaaaaaatgttaaggtttacatcatcttcattttcatcttcattcccccttcttcatcatcttgaagctacc 100  Q
    ||||||| || ||| ||||||||||||| |||||| |||| ||||||||||||||||||      |||||||||||||||||||||||||| ||||||||    
11039687 tgttttagtcatttccgttaatattattcaaaaaacgttagggtttacatcatcttcat------cttcattcccccttcttcatcatcttcaagctacc 11039594  T
101 ttcatacaaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccgtaactttattttactcccaagttcttttaattgttgtgaaa 200  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||    
11039593 ttcataaaaaactcatgagaaaatcccagaattgattcacatgaatgttattcaaaccctaactttattttactcccaaattgttttaattgttgtgaaa 11039494  T
201 gggttaattcaaattcaaaccctctcttc 229  Q
    |||||||||||||||||||||||||||||    
11039493 gggttaattcaaattcaaaccctctcttc 11039465  T

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Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 46014804 - 46015030
Alignment:
1 tgttttaatccttttcgttaatattatttaaaaaatgttaaggtttacatcatcttcattttcatcttcattcccccttcttcatcatcttgaagctacc 100  Q
    ||||||| |||||| ||||||||||||| |||||| |||| ||||||||||||||||||      |||||||||||||||||||||||||| |||||||     
46014804 tgttttagtcctttccgttaatattattcaaaaaacgttagggtttacatcatcttcat------cttcattcccccttcttcatcatcttcaagctact 46014897  T
101 ttcatacaaaa-ctcatgagaaaaacccagaattgattcacatgaatgttattcaaaccgtaactttattttactcccaagttcttttaattgttgtgaa 199  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||    
46014898 ttcataaaaaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccctaactttattttacttccaaattcttttaattgttgtgaa 46014997  T
200 agggttaattcaaattcaaaccctctcttcccc 232  Q
    |||||| |||||||||||||| |||||||||||    
46014998 agggttgattcaaattcaaactctctcttcccc 46015030  T

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Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 62 - 232
Target Start/End: Complemental strand, 2939696 - 2939527
Alignment:
62 tcatcttcattcccccttcttcatcatcttgaagctaccttcatacaaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccgta 161  Q
    |||||||||||||||||||||||||||||| | |||||||||||  ||||||||||||||||| |||||||||| |||||||||||||||||||||| ||    
2939696 tcatcttcattcccccttcttcatcatcttcatgctaccttcatcaaaaactcatgagaaaaatccagaattgactcacatgaatgttattcaaacc-ta 2939598  T
162 actttattttactcccaagttcttttaattgttgtgaaagggttaattcaaattcaaaccctctcttcccc 232  Q
    |||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||    
2939597 actttattttactcccaaattcttttaattgttgtgaaatggttaactcaaattcaaaccctctcttcccc 2939527  T

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Target: chr1; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 56 - 232
Target Start/End: Original strand, 33332330 - 33332509
Alignment:
56 tcattttcatcttcattcccccttcttcatcatcttgaagctaccttcatacaaaa---ctcatgagaaaaacccagaattgattcacatgaatgttatt 152  Q
    |||| ||||||||||||||||||||||||||||||| | |||| ||||||| ||||   ||||||||||||| |||||||||| ||||||||||||||||    
33332330 tcatcttcatcttcattcccccttcttcatcatcttcatgctatcttcataaaaaaaaactcatgagaaaaatccagaattgactcacatgaatgttatt 33332429  T
153 caaaccgtaactttattttactcccaagttcttttaattgttgtgaaagggttaattcaaattcaaaccctctcttcccc 232  Q
    |||||| ||||||||||||| ||| || ||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
33332430 caaaccctaactttattttaatcctaaattcatttaattgttgtgaaagggttaactcaaattcaaaccctctcttcccc 33332509  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 2939730 - 2939686
Alignment:
16 cgttaatattatttaaaaaatgttaaggtttacatcatcttcatt 60  Q
    ||||||| ||||| |||||| |||| |||||||||||||||||||    
2939730 cgttaattttattcaaaaaacgttagggtttacatcatcttcatt 2939686  T

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Target: scaffold0029 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 70781 - 71005
Alignment:
9 tccttttcgttaatattatttaaaaaat-gttaaggtttacatcatcttcattttcatcttcattcccccttcttcatcatcttgaagctaccttcatac 107  Q
    |||||| ||||||| ||||| ||||||  |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||     
70781 tcctttccgttaattttattcaaaaaaacgttagggtttacatcatcttcatcttcatcttcattcccccttcttcatcatcttcatgctaccttcataa 70880  T
108 aaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccgtaactttattttactcccaagttcttttaattgttgtgaaagggttaa 207  Q
    ||||||||||||||||| | |||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||    
70881 aaaactcatgagaaaaatctagaattgactcacatgaatgttattcaaaccctaactttattttactcccaaattcttttaattgttgtgaaatggttaa 70980  T
208 ttcaaattcaaaccctctcttcccc 232  Q
     ||||||||||||| ||||||||||    
70981 ctcaaattcaaaccatctcttcccc 71005  T

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Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 9312131 - 9311906
Alignment:
1 tgttttaatccttttcgttaatattatttaaaaaatgttaaggtttacatcatcttcattttcatcttcattcccccttcttcatcatcttgaagctacc 100  Q
    ||||||| ||||||  |||||||||||| || ||| |||| ||||||||||||||||||      ||||| | |||||||||||||||||| ||||||||    
9312131 tgttttagtcctttctgttaatattattcaacaaacgttagggtttacatcatcttcat------cttcagttccccttcttcatcatcttcaagctacc 9312038  T
101 ttcatacaaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccgtaactttattttactcccaagttcttttaattgttgtgaaa 200  Q
    |||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
9312037 ttcataaaaaactcatgagaaaaacctagaattcattcacatgaatgttattcaaaccctaactttattttactcccaaattcttttaattgttgtgaaa 9311938  T
201 gggttaattcaaattcaaaccctctcttcccc 232  Q
    ||||||||||||||||||||||||||||||||    
9311937 gggttaattcaaattcaaaccctctcttcccc 9311906  T

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Target: chr8; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 62 - 232
Target Start/End: Complemental strand, 14817746 - 14817577
Alignment:
62 tcatcttcattcccccttcttcatcatcttgaagctaccttcatacaaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccgta 161  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
14817746 tcatcttcattcccccttcttcatcatcttcaagctaccttcataaaaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaacccta 14817647  T
162 actttattttactcccaagttcttttaattgttgtgaaagggttaattcaaattcaaaccctctcttcccc 232  Q
    | |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
14817646 a-tttattttactctcaaattcttttaattgttgtgaaagggttaattcaaattcaaaccctctcttcccc 14817577  T

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Target: chr8; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 62 - 232
Target Start/End: Original strand, 14827993 - 14828162
Alignment:
62 tcatcttcattcccccttcttcatcatcttgaagctaccttcatacaaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccgta 161  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
14827993 tcatcttcattcccccttcttcatcatcttcaagctaccttcataaaaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaacccta 14828092  T
162 actttattttactcccaagttcttttaattgttgtgaaagggttaattcaaattcaaaccctctcttcccc 232  Q
    | |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
14828093 a-tttattttactctcaaattcttttaattgttgtgaaagggttaattcaaattcaaaccctctcttcccc 14828162  T

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Target: chr7 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 61 - 232
Target Start/End: Complemental strand, 45088151 - 45087979
Alignment:
61 ttcatcttcattcccccttcttcatcatcttgaagctaccttcatacaaaa-ctcatgagaaaaacccagaattgattcacatgaatgttattcaaaccg 159  Q
    ||||||||||||||||||||||||||||||| | |||||||||||| |||| |||||||||||||  ||||||||| ||||||||||||||||||||||     
45088151 ttcatcttcattcccccttcttcatcatcttcatgctaccttcataaaaaaactcatgagaaaaattcagaattgactcacatgaatgttattcaaaccc 45088052  T
160 taactttattttactcccaagttcttttaattgttgtgaaagggttaattcaaattcaaaccctctcttcccc 232  Q
    |||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||| |||||||||||||||||    
45088051 taactttatttttctcccaaattcatttaattgttgtgaaagggttaactcaaatccaaaccctctcttcccc 45087979  T

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Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 61 - 232
Target Start/End: Original strand, 17970949 - 17971118
Alignment:
61 ttcatcttcattcccccttcttcatcatcttgaagctaccttcatacaaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccgt 160  Q
    |||||||||| |||||||| ||||||||||| |   |||||||||| |||||||||||||||| |||||||||||||||||| || |||||||||||| |    
17970949 ttcatcttcaatcccccttattcatcatcttcatcgtaccttcataaaaaactcatgagaaaa-cccagaattgattcacatcaa-gttattcaaaccct 17971046  T
161 aactttattttactcccaagttcttttaattgttgtgaaagggttaattcaaattcaaaccctctcttcccc 232  Q
    |||||| |||||||||||| ||||||||||| |||||||||||||||  |||||||||||||||||||||||    
17971047 aactttgttttactcccaaattcttttaatttttgtgaaagggttaacccaaattcaaaccctctcttcccc 17971118  T

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Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 19718845 - 19718610
Alignment:
1 tgttttaatccttttcgttaatattatttaaaaaat---gttaaggtttacatcatcttcattttcatcttcattcccccttcttcatcatcttgaagct 97  Q
    ||||||| |||||| ||||||||| ||| ||||||    |||| ||||||||||||||||||      |||||||||||||||||||||||||| |||||    
19718845 tgttttagtcctttccgttaatataattaaaaaaaaaacgttagggtttacatcatcttcat------cttcattcccccttcttcatcatcttcaagct 19718752  T
98 accttcatacaaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccgtaactt-tattttactccca------agttcttttaat 190  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |  |||    |||  || ||      | || |||||||    
19718751 accttcataaaaaactcatgagaaaaacccataattgattcacatgaatgttattcaaaccctctcttcccctttcatctcatcttttaattgttttaat 19718652  T
191 tgttgtgaaagggttaattcaaattcaaaccctctcttcccc 232  Q
    |||||||||||||||||||||| |||||||||||||||||||    
19718651 tgttgtgaaagggttaattcaagttcaaaccctctcttcccc 19718610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 37966974 - 37967073
Alignment:
56 tcattttcatcttcattcccccttcttcatcatcttgaagctaccttcat-acaaaactcatgagaaaaacccagaattgattcacatgaatgttattca 154  Q
    |||| ||||||||||||||||||| ||||||||||| | ||||||||||| | ||||||||||||||||| ||| ||||||||||||| || ||||||||    
37966974 tcatcttcatcttcattcccccttattcatcatcttcatgctaccttcataaaaaaactcatgagaaaaatccaaaattgattcacatcaa-gttattca 37967072  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 37967690 - 37967608
Alignment:
56 tcattttcatcttcattcccccttcttcatcatcttgaagctaccttcatacaaaactcatgagaaaaacccagaattgattcac 140  Q
    |||| ||||||||||||||||||||||||| ||||| | |||||||||||| |||||| ||  ||||||||||||||||||||||    
37967690 tcatcttcatcttcattcccccttcttcattatcttcatgctaccttcataaaaaacttat--gaaaaacccagaattgattcac 37967608  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 37967514 - 37967468
Alignment:
152 tcaaaccgtaactttattttactcccaagttcttttaattgttgtga 198  Q
    ||||||| |||||||||||||||||| | ||||||||||||||||||    
37967514 tcaaaccctaactttattttactcccgaattcttttaattgttgtga 37967468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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