View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20479_high_107 (Length: 220)
Name: NF20479_high_107
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_high_107 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 39260994 - 39261175
Alignment:
| Q |
19 |
agacttgaaccattctagttaaaggacttccagaaggtaatctatgcctataaagtggagtacctaacacaaacaccaatatggaaacaacaagcaatat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39260994 |
agacttgaaccattctagttaaaggacttccagaaggtaatctatgcctataaagtggagtacctaacacaaacaccaatatggaaacaacaagcaatat |
39261093 |
T |
|
| Q |
119 |
ggttggaatcccatagccaagggcaaaaccaacattgtcttgtatgtaaaccaatattgtttgagctgaaatggttccaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39261094 |
ggttggaatcccatagccaagggcaaaaccaacattgtcttgtatgtaaaccaatattgtttgagctgaaatggttccaatt |
39261175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 39245398 - 39245579
Alignment:
| Q |
19 |
agacttgaaccattctagttaaaggacttccagaaggtaatctatgcctataaagtggagtacctaacacaaacaccaatatggaaacaacaagcaatat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| ||| || || |||| |||||||||| | |||| |||||||||||| |
|
|
| T |
39245398 |
agacttgaaccattctagttaaaggacttccagaaggcaatttatgtctataaattggtgttccaaacaaaaacaccaatgttgaaaaaacaagcaatat |
39245497 |
T |
|
| Q |
119 |
ggttggaatcccatagccaagggcaaaaccaacattgtcttgtatgtaaaccaatattgtttgagctgaaatggttccaatt |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||| ||| |||||| ||||||| |
|
|
| T |
39245498 |
ggttggaatcccataaccaagggcaaaaccaacattgtcttgtatgtagactaatactgtttcggctaaaatggctccaatt |
39245579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 37 - 166
Target Start/End: Original strand, 39251420 - 39251548
Alignment:
| Q |
37 |
ttaaaggacttccagaaggtaatctatgcctataaagtggagtacctaacacaaacaccaatatggaaacaacaagcaatatggttggaatcccatagcc |
136 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||| || || |||| |||||||||| | |||| ||||||||| ||||||||||||||||| || |
|
|
| T |
39251420 |
ttaaagggcttccagaaggtaatctatgtctataaagtggtgttccaaacaaaaacaccaatgttgaaaaaacaagcaagatggttggaatcccataacc |
39251519 |
T |
|
| Q |
137 |
aagggcaaaaccaacattgtcttgtatgta |
166 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |
|
|
| T |
39251520 |
aagggc-aaaccaacattgtcttgtatgta |
39251548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University