View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_high_108 (Length: 220)
Name: NF20479_high_108
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_high_108 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 27694778 - 27694989
Alignment:
| Q |
1 |
tcaatttggtctctaacaattttctttcggcctaatttagtcccaataaaaataatatcaaactagtccttgacatttttaaactatataacctagtgag |
100 |
Q |
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| T |
27694778 |
tcaatttgatctctaacaattttctttcggtctaatttagtcccaataaaaataatatcaaactagtccttgacatttttaaactatataacctagtgat |
27694877 |
T |
|
| Q |
101 |
aagattatttggttagacagcttatctggtttatagcacaagcacttaatatgataaaagctaatgaaaat----------tgttttcaaaagttctttt |
190 |
Q |
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| T |
27694878 |
aagattatttggatagtcagcttatctggtttatagcacaagcacttaatacgaaaaaagctaatgaaaattgtcataagatgttttcaaaagttctttt |
27694977 |
T |
|
| Q |
191 |
aaatagtcacac |
202 |
Q |
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|||||||||||| |
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| T |
27694978 |
aaatagtcacac |
27694989 |
T |
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Back To:
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 31317787 - 31317866
Alignment:
| Q |
2 |
caatttggtctctaacaattttctttcggcctaatttagtccc--aataaaaataatatcaaactagtccttgacatttt |
79 |
Q |
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|||||||||| | ||| |||||| ||||||||||||||||| | |||||||||| ||||||||||| ||||||||| |
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| T |
31317787 |
caatttggtccttgacagttttctcacggcctaatttagtccccgacaaaaaataataccaaactagtccctgacatttt |
31317866 |
T |
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