View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20479_high_111 (Length: 213)

Name: NF20479_high_111
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20479_high_111
NF20479_high_111
[»] chr1 (11 HSPs)
chr1 (1-205)||(1816140-1816344)
chr1 (1-205)||(1856700-1856904)
chr1 (1-192)||(1868308-1868499)
chr1 (1-162)||(1842729-1842890)
chr1 (12-138)||(9170802-9170928)
chr1 (12-201)||(9200369-9200558)
chr1 (5-201)||(9218878-9219074)
chr1 (12-140)||(9118348-9118476)
chr1 (5-140)||(9161969-9162104)
chr1 (1-96)||(9156053-9156148)
chr1 (11-150)||(9229769-9229908)
[»] chr7 (3 HSPs)
chr7 (38-205)||(37567642-37567809)
chr7 (1-43)||(37572119-37572161)
chr7 (19-63)||(30105892-30105936)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 1816140 - 1816344
Alignment:
Q  1 ataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaat 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1816140 ataaaccaacaaaggaacttctgtttctagacaacaccccaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcgttaatgaat 1816239  T
Q  101 tgttcaatttggctttcgtctattgttttggactttttgatggcaacaattctcttatcatcaagttcccctttgaaaactgtgccaaaacctcctctac 200  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  1816240 tgttcaatttggctttcgtctattgttttggactttttgatagccacaattctattatcatcaagttcccctttgaaaactgtaccaaaacctcctctac 1816339  T
Q  201 ctatg 205  Q
    |||||    
T  1816340 ctatg 1816344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 1856904 - 1856700
Alignment:
Q  1 ataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1856904 ataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacatttctgtgatttatttgagagacaacatccacctcattaatgaat 1856805  T
Q  101 tgttcaatttggctttcgtctattgttttggactttttgatggcaacaattctcttatcatcaagttcccctttgaaaactgtgccaaaacctcctctac 200  Q
    |||||||||||||||| |||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| |||||||||||| |||    
T  1856804 tgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagttcccctttgtaaactgtaccaaaacctcctttac 1856705  T
Q  201 ctatg 205  Q
    |||||    
T  1856704 ctatg 1856700  T

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Target: chr1; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 1868499 - 1868308
Alignment:
Q  1 ataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaat 100  Q
    |||||||||||||||||||||||| |||| ||||||||| ||||||||||| |||||||| |||||||||||||||| |||| |||||||||||||||||    
T  1868499 ataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaaccacctcattaatgaat 1868400  T
Q  101 tgttcaatttggctttcgtctattgttttggactttttgatggcaacaattctcttatcatcaagttcccctttgaaaactgtgccaaaacc 192  Q
    || || |||||||||   |||||| |||| || |||||||| ||||| ||||| |||||||| ||    ||||||||||| || ||||||||    
T  1868399 tgatcgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatctagaagtcctttgaaaacggtaccaaaacc 1868308  T

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Target: chr1; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 1842890 - 1842729
Alignment:
Q  1 ataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaat 100  Q
    |||||||||||||||||||||||| |||| ||||||||| ||||||||||| |||||||| |||||||||||||||| || |   |||||||||||||||    
T  1842890 ataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaataattacctcattaatgaat 1842791  T
Q  101 tgttcaatttggctttcgtctattgttttggactttttgatggcaacaattctcttatcatc 162  Q
    || |  |||||||||   |||||| |||| || |||||||| ||||| ||||| ||||||||    
T  1842790 tgattgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatc 1842729  T

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Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 9170802 - 9170928
Alignment:
Q  12 aaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttg 111  Q
    ||||||||||||| |||||||||||||||| ||||||||| |||||||| ||||||||||| |  | |||| | ||||||||||||||||| ||||||||    
T  9170802 aaggaacttctgtctctagacaacaccctaggagtttgacaacattcctatgatttatttgggtcagaacaactacctcattaatgaattgctcaatttg 9170901  T
Q  112 gctttcgtctattgttttggacttttt 138  Q
      || |||| ||| ||||||| |||||    
T  9170902 atttgcgtcaattattttggatttttt 9170928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 9200369 - 9200558
Alignment:
Q  12 aaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttg 111  Q
    ||||||||||||| ||||||||||| |||| ||||||||| |||||||| ||||||||||| |  | |||| | ||||||||||||||||| ||||||||    
T  9200369 aaggaacttctgtctctagacaacagcctaggagtttgacaacattcctatgatttatttgggtcagaacaactacctcattaatgaattgctcaatttg 9200468  T
Q  112 gctttcgtctattgttttggactttttgatggcaacaattctcttatcatcaagttcccctttgaaaactgtgccaaaacctcctctacc 201  Q
      || |||| ||| ||||||| ||||| |  || |||||| | ||||||   |   | |||||| ||||||| |||||||||||||||||    
T  9200469 atttgcgtcaattattttggatttttttacagcgacaattttgttatcaggtaaaactcctttgtaaactgtaccaaaacctcctctacc 9200558  T

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Target: chr1; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 9218878 - 9219074
Alignment:
Q  5 accaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgtt 104  Q
    |||||| ||||||||||||| || | |||||||||||| |||||||| || ||||| ||||||||||| || | |||| | ||||||||||||||||| |    
T  9218878 accaacgaaggaacttctgtctccaaacaacaccctaaaagtttgacaacgttcctatgatttatttgggacagaacaactacctcattaatgaattgct 9218977  T
Q  105 caatttggctttcgtctattgttttggactttttgatggcaacaattctcttatc-atcaagttcccctttgaaaactgtgccaaaacctcctctacc 201  Q
    | || ||  || |||||||| |||||||||||||||  || |||||| | |||||   |||  |  |||||||||||||| |||||||||||||||||    
T  9218978 cgatctgatttgcgtctattattttggactttttgacagcgacaattttgttatcgggcaaaat-tcctttgaaaactgtaccaaaacctcctctacc 9219074  T

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Target: chr1; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 12 - 140
Target Start/End: Complemental strand, 9118476 - 9118348
Alignment:
Q  12 aaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttg 111  Q
    ||||||||||||| |||| |||||||||||| |||||||| |||||||| ||||||||||| || | || | | ||||||||||||||||| || |||||    
T  9118476 aaggaacttctgtctctaaacaacaccctaaaagtttgacaacattcctatgatttatttgggacagaataactacctcattaatgaattgctcgatttg 9118377  T
Q  112 gctttcgtctattgttttggactttttga 140  Q
      || |||||||| || ||||||||||||    
T  9118376 atttgcgtctattattctggactttttga 9118348  T

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Target: chr1; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 9161969 - 9162104
Alignment:
Q  5 accaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgtt 104  Q
    |||||| ||||||||||||| |||| |||||| || ||||||||||| ||||| || ||||||||||| || | |||| | ||||| |||||||| || |    
T  9161969 accaacgaaggaacttctgtctctaaacaacatcccaagagtttgacaacatttctatgatttatttgggacagaacaactacctcgttaatgaactgct 9162068  T
Q  105 caatttggctttcgtctattgttttggactttttga 140  Q
    |||||||  || | |||||| ||||||| |||||||    
T  9162069 caatttgatttgcatctattattttggattttttga 9162104  T

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Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 9156053 - 9156148
Alignment:
Q  1 ataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaat 96  Q
    |||||||||  ||||||||||||| |||| |||||| || ||||||||||| ||||| |||||||||||||| || |  ||| | |||||||||||    
T  9156053 ataaaccaaggaaggaacttctgtctctaaacaacatcccaagagtttgacaacatttctgtgatttatttgggataggacaactacctcattaat 9156148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 9229769 - 9229908
Alignment:
Q  11 aaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaattt 110  Q
    |||||||||| ||| || | |||||| || ||||||||||| ||||| || ||||||||||| || | |||| |||||||||| |||||||| || | ||    
T  9229769 aaaggaacttgtgtctccaaacaacatcccaagagtttgacaacatttctatgatttatttgggacaaaacaaccacctcatttatgaattgctctactt 9229868  T
Q  111 ggctttcgtctattgttttggactttttgatggcaacaat 150  Q
    || |  | || ||| |||||||||| ||||| ||||||||    
T  9229869 gggtggcatccattattttggacttcttgattgcaacaat 9229908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 1e-61; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 38 - 205
Target Start/End: Complemental strand, 37567809 - 37567642
Alignment:
Q  38 cctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggactttt 137  Q
    ||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||| |||||||||| |||||||||||||| ||||    
T  37567809 cctaagagtttgaccacattcctatgatttatttgagagacaatgtccacctcattaatgaattgttcattttggctttcatctattgttttggattttt 37567710  T
Q  138 tgatggcaacaattctcttatcatcaagttcccctttgaaaactgtgccaaaacctcctctacctatg 205  Q
    |||| |||||| |||| |||||||| |||| ||||||||||||||| |||||||||||||||||||||    
T  37567709 tgatagcaacagttctattatcatctagtttccctttgaaaactgtaccaaaacctcctctacctatg 37567642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 37572161 - 37572119
Alignment:
Q  1 ataaaccaacaaaggaacttctgtttctagacaacaccctaag 43  Q
    ||||||||||  |||||||||||||||||||||||||||||||    
T  37572161 ataaaccaaccgaggaacttctgtttctagacaacaccctaag 37572119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 30105936 - 30105892
Alignment:
Q  19 ttctgtttctagacaacaccctaagagtttgaccacattcctgtg 63  Q
    ||||||||| |||||||| |||||||||||||| | |||||||||    
T  30105936 ttctgtttcaagacaacagcctaagagtttgacaatattcctgtg 30105892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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