View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_high_112 (Length: 203)
Name: NF20479_high_112
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_high_112 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 23423009 - 23423180
Alignment:
| Q |
14 |
cacagatgaaactcacagttaaacactctatgccctatttgcatcaagaagttaacaaaatggtaacttgttcaaaaacaaactttgttggtttggtttt |
113 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
23423009 |
cacaaatgaaactcacagttaaacactctataccctatttgcatcaagaagttaacaaaatggtaacttgttcaaaaacaaactttgtttgtttggtttt |
23423108 |
T |
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| Q |
114 |
tgatcttttctcaagcgatgtaatcgacatcgctaaaaaattcaaccttatgtcttatattttcgctacttc |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23423109 |
tgatcttttctcaagcgatgtaatcgacatcgctaaaaaattcaaccttatgtcttatattttcgctacttc |
23423180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 549619 - 549448
Alignment:
| Q |
14 |
cacagatgaaactcacagttaaacactctatgccctatttgcatcaagaagttaacaaaatggtaacttgttcaaaaacaaactttgttggtttggtttt |
113 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
549619 |
cacaaatgaaactcacagttaaacactctataccctatttgcatcaagaagttaacaaaatcgtaacttgttcaaaaacaaactttgttggtttggtttt |
549520 |
T |
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| Q |
114 |
tgatcttttctcaagcgatgtaatcgacatcgctaaaaaattcaaccttatgtcttatattttcgctacttc |
185 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
549519 |
tgatcttttctcaagtgatgtaatcgacatcgctaaaaaattcaaccttatgtcttatattttcgctacttc |
549448 |
T |
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