View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20479_high_16 (Length: 537)
Name: NF20479_high_16
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_high_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 19 - 530
Target Start/End: Original strand, 51149008 - 51149519
Alignment:
| Q |
19 |
gcacatacattagtctgaactcttgaacatgatactatatatgcagggctatgacacgatagtaggtgagagaggaattcaattatctgggggacagaag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51149008 |
gcacatacattagtctgaactcttgaacatgatactatatatgtagggctatgacacgatagtaggtgagagaggaattcaattatctgggggacagaag |
51149107 |
T |
|
| Q |
119 |
cagcgtgtggcaattgcgagagctatagtgaagaatccaaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgagaaggtggtac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
51149108 |
cagcgtgtggcaattgcgagagctatagtgaagaatccaaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgaaaaagtggtac |
51149207 |
T |
|
| Q |
219 |
aagatgcacttgaccgtgtaatggtggagcgaacgacaataatagtggcgcataggttatcgactatcaaaggtgcagatttaatagcagtagttaagaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51149208 |
aagatgcacttgaccgtgtaatggtggagcgaacgacaataatagtggcgcataggttatcgactatcaaaggtgcagatttaatagcagtagttaagaa |
51149307 |
T |
|
| Q |
319 |
tggtgtgatagcagagaaaggaaaacatgaagcattgctcgataagggtggtgactatgcttctttagtagcattacacacaagtgcttctacatcttag |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
51149308 |
tggtgtgatagcagagaaaggaaaacatgaagcattgctccataagggtggtgactatgcttctttagtagcattacatacaagtgattctacatcttag |
51149407 |
T |
|
| Q |
419 |
atccctttggcatcaattgttgttgtaaaataagattggtagacacttttgtccttatcatggtgtgtgtaaattaaatagtaataggatcatcctctgc |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51149408 |
atccctttggcatcaattgttgttgtaaaataagattggtatacacttttgtccttatcatggtgtgtgtaaattaaatagtaataggatcatcctctgc |
51149507 |
T |
|
| Q |
519 |
tagcgctctctg |
530 |
Q |
| |
|
|||||||||||| |
|
|
| T |
51149508 |
tagcgctctctg |
51149519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 21 - 454
Target Start/End: Original strand, 51159873 - 51160306
Alignment:
| Q |
21 |
acatacattagtctgaactcttgaacatgatactatatatgcagggctatgacacgatagtaggtgagagaggaattcaattatctgggggacagaagca |
120 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
51159873 |
acatacataggtctgaaatcttgaacatgatactatatatgcagggctatgacacgatagtaggtgagagaggaattcaattatccgggggacagaagca |
51159972 |
T |
|
| Q |
121 |
gcgtgtggcaattgcgagagctatagtgaagaatccaaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgagaaggtggtacaa |
220 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
51159973 |
gcgtgtggcaattgcacgagctatagtgaagaatccaaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgaaaaagtggtacaa |
51160072 |
T |
|
| Q |
221 |
gatgcacttgaccgtgtaatggtggagcgaacgacaataatagtggcgcataggttatcgactatcaaaggtgcagatttaatagcagtagttaagaatg |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51160073 |
gatgcacttgaccgtgtaatggtggagcgaacgacaataatagtggcgcataggttatcgactatcaaaggtgcagatttaatagcagtagttaagaatg |
51160172 |
T |
|
| Q |
321 |
gtgtgatagcagagaaaggaaaacatgaagcattgctcgataagggtggtgactatgcttctttagtagcattacacacaagtgcttctacatcttagat |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||| | || | ||||||||||||||||||||| |
|
|
| T |
51160173 |
gtgtgatagcagagaaaggaaaacatgaagcgttgctccataagggcggtgactatgcttctttagtagcactgcataaaagtgcttctacatcttagat |
51160272 |
T |
|
| Q |
421 |
ccctttggcatcaattgttgttgtaaaataagat |
454 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||| |
|
|
| T |
51160273 |
ccctttcgcatcaatagttgttgtaaaataagat |
51160306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 58 - 418
Target Start/End: Original strand, 51202609 - 51202969
Alignment:
| Q |
58 |
tatgcagggctatgacacgatagtaggtgagagaggaattcaattatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatcca |
157 |
Q |
| |
|
||||||||| ||||| || ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51202609 |
tatgcagggttatgatacagtagtaggagagagaggagttcaattatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatcca |
51202708 |
T |
|
| Q |
158 |
aaaatactattactagatgaagcaactagtgcacttgatgctgagtctgagaaggtggtacaagatgcacttgaccgtgtaatggtggagcgaacgacaa |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51202709 |
aaaatactattactagatgaagcaactagtgcacttgatgctgagtctgagaaggtggtacaagatgcacttgaccgtgtaatggtggagcgaacgacaa |
51202808 |
T |
|
| Q |
258 |
taatagtggcgcataggttatcgactatcaaaggtgcagatttaatagcagtagttaagaatggtgtgatagcagagaaaggaaaacatgaagcattgct |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51202809 |
taatagtggcgcataggttatcgactatcaaaggtgcagatttaatagcagtagttaagaatggtgtgatagcagagaaaggaaaacatgaagcattgct |
51202908 |
T |
|
| Q |
358 |
cgataagggtggtgactatgcttctttagtagcattacacacaagtgcttctacatcttag |
418 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51202909 |
ccataagggtggtgactatgcttctttagtagcattacacacaagtgcttctacatcttag |
51202969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 39 - 422
Target Start/End: Complemental strand, 29934138 - 29933755
Alignment:
| Q |
39 |
tcttgaacatgatactatatatgcagggctatgacacgatagtaggtgagagaggaattcaattatctgggggacagaagcagcgtgtggcaattgcgag |
138 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| || |
|
|
| T |
29934138 |
tcttgagcatggtactatatatgcagggctatgacacgatagtaggcgagagaggaattcaattatccgggggacagaagcagcgggtggcaattgcaag |
29934039 |
T |
|
| Q |
139 |
agctatagtgaagaatccaaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgagaaggtggtacaagatgcacttgaccgtgta |
238 |
Q |
| |
|
||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| |||| |
|
|
| T |
29934038 |
agcgttggtgaagaatccgaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgaaaaagtggtgcaagatgcacttgactgtgtt |
29933939 |
T |
|
| Q |
239 |
atggtggagcgaacgacaataatagtggcgcataggttatcgactatcaaaggtgcagatttaatagcagtagttaagaatggtgtgatagcagagaaag |
338 |
Q |
| |
|
|||||||| ||||| ||||||||||| || ||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||| ||||||||| |
|
|
| T |
29933938 |
atggtggaccgaacaacaataatagtagctcataggttatcgactataaagggtgcagatttaattgcagtcgttaagaatggtgtgatatcagagaaag |
29933839 |
T |
|
| Q |
339 |
gaaaacatgaagcattgctcgataagggtggtgactatgcttctttagtagcattacacacaagtgcttctacatcttagatcc |
422 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29933838 |
gaaaacatgaggcattgctacataagggtggtgactatgcttctttagcagcattacacacaagtgcttctacatcttagatcc |
29933755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 57 - 401
Target Start/End: Original strand, 51216269 - 51216613
Alignment:
| Q |
57 |
atatgcagggctatgacacgatagtaggtgagagaggaattcaattatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatcc |
156 |
Q |
| |
|
|||||||||| ||||| || |||||||| ||| |||| |||||| | ||||| ||||||||||| |||||||||||||| ||||| ||||| || | || |
|
|
| T |
51216269 |
atatgcaggggtatgatacaatagtaggagagcgagggattcaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaacaggcc |
51216368 |
T |
|
| Q |
157 |
aaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgagaaggtggtacaagatgcacttgaccgtgtaatggtggagcgaacgaca |
256 |
Q |
| |
|
|| |||| || |||||||||| || || ||||| |||||||| |||||||| || ||||| |||||||||||||| | || | |||||| |||| || |
|
|
| T |
51216369 |
aagaatattactactagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccacc |
51216468 |
T |
|
| Q |
257 |
ataatagtggcgcataggttatcgactatcaaaggtgcagatttaatagcagtagttaagaatggtgtgatagcagagaaaggaaaacatgaagcattgc |
356 |
Q |
| |
|
|| | ||||| ||||| ||||| || || || |||||| ||| ||| ||||| ||||| ||||| ||||| | |||||||||||||||||| |||| |
|
|
| T |
51216469 |
attgtggtggctcatagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatgacatattga |
51216568 |
T |
|
| Q |
357 |
tcgataagggtggtgactatgcttctttagtagcattacacacaa |
401 |
Q |
| |
|
|| | |||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
51216569 |
tcaacaagggtggcacctatgcttctttagtagcattgcacacaa |
51216613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 5e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 55 - 381
Target Start/End: Original strand, 36288937 - 36289263
Alignment:
| Q |
55 |
atatatgcagggctatgacacgatagtaggtgagagaggaattca-attatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaa |
153 |
Q |
| |
|
||||||||||||||||||||| | || || ||| ||||| | || |||||| || |||||||||||||||||||||||||| ||||| ||| ||||||| |
|
|
| T |
36288937 |
atatatgcagggctatgacaccgttgtgggggagcgagga-tccagattatcgggtggacagaagcagcgtgtggcaattgcaagagcaatattgaagaa |
36289035 |
T |
|
| Q |
154 |
tccaaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgagaaggtggtacaagatgcacttgaccgtgtaatggtggagcgaacg |
253 |
Q |
| |
|
|||||||||| || ||||||||||||| || ||||| |||||||||||||| || || || || || |||||||| || || || ||||| || ||||| |
|
|
| T |
36289036 |
tccaaaaatattactactagatgaagccaccagtgcccttgatgctgagtccgaaaaagtagttcaggatgcactggatcgagttatggttgaccgaacc |
36289135 |
T |
|
| Q |
254 |
acaataatagtggcgcataggttatcgactatcaaaggtgcagatttaatagcagtagttaagaatggtgtgatagcagagaaaggaaaacatgaagcat |
353 |
Q |
| |
|
||||| |||||||| || |||||||| ||||| || |||||||||||||| ||||| || |||||||| || || ||||||||||||| |||||| ||| |
|
|
| T |
36289136 |
acaattatagtggcacacaggttatccactattaagggtgcagatttaattgcagtggtgaagaatggggtcattacagagaaaggaaatcatgaaacat |
36289235 |
T |
|
| Q |
354 |
tgctcgataagggtggtgactatgcttc |
381 |
Q |
| |
|
|| || | || || ||| |||||||||| |
|
|
| T |
36289236 |
tgatcaacaaaggaggtcactatgcttc |
36289263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 57 - 391
Target Start/End: Complemental strand, 49734233 - 49733899
Alignment:
| Q |
57 |
atatgcagggctatgacacgatagtaggtgagagaggaattcaattatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatcc |
156 |
Q |
| |
|
|||||||||| |||||||| |||||||| |||||||| || ||| | ||||| ||||||||||| |||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
49734233 |
atatgcaggggtatgacacaatagtaggggagagagggatacaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaagaatcc |
49734134 |
T |
|
| Q |
157 |
aaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgagaaggtggtacaagatgcacttgaccgtgtaatggtggagcgaacgaca |
256 |
Q |
| |
|
|| |||| || ||||||||||||| || ||||||||||||||||||||||| || ||||| || ||||||||||| | | | |||||| |||| || |
|
|
| T |
49734133 |
aagaatattactactagatgaagccacaagtgcacttgatgctgagtctgaaaaagtggttcatgatgcacttgatagattgagggtggacagaaccacc |
49734034 |
T |
|
| Q |
257 |
ataatagtggcgcataggttatcgactatcaaaggtgcagatttaatagcagtagttaagaatggtgtgatagcagagaaaggaaaacatgaagcattgc |
356 |
Q |
| |
|
|| | ||||| ||||| |||| || || || ||| || ||| ||| ||||| ||||| ||||| ||||| | |||||||||||| |||||| | |||| |
|
|
| T |
49734033 |
attgtggtggctcatagactatctaccataaagggttcaaattcaattgcagtggttaaaaatggagtgattgaagagaaaggaaagcatgaaacgttgc |
49733934 |
T |
|
| Q |
357 |
tcgataagggtggtgactatgcttctttagtagca |
391 |
Q |
| |
|
|| | ||| ||||| ||||||||||||||||||| |
|
|
| T |
49733933 |
tcaacaagagtggtacctatgcttctttagtagca |
49733899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 83 - 210
Target Start/End: Original strand, 27727391 - 27727518
Alignment:
| Q |
83 |
ggtgagagaggaattcaattatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatccaaaaatactattactagatgaagcaa |
182 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||| | ||||| | | |||||||| || |||||| ||| || ||| |||||||||||| |
|
|
| T |
27727391 |
ggtgagagaggaatacaattatctgggggacaaaagcagcgaattgcaatatctcgtgctatagttaaaaatccatcaatccttttattagatgaagcaa |
27727490 |
T |
|
| Q |
183 |
ctagtgcacttgatgctgagtctgagaa |
210 |
Q |
| |
|
||||||| | ||||| ||||||||||| |
|
|
| T |
27727491 |
ctagtgctttggatgccgagtctgagaa |
27727518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 5827236 - 5827312
Alignment:
| Q |
128 |
gcaattgcgagagctatagtgaagaatccaaaaatactattactagatgaagcaactagtgcacttgatgctgagtc |
204 |
Q |
| |
|
|||||||| ||||||||| |||| || || | |||||| ||||| ||||| ||||| |||||||| ||||||||||| |
|
|
| T |
5827236 |
gcaattgcaagagctatattgaaaaaccctagaatacttttacttgatgaggcaaccagtgcactcgatgctgagtc |
5827312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 204
Target Start/End: Complemental strand, 29327205 - 29327103
Alignment:
| Q |
102 |
tatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatccaaaaatactattactagatgaagcaactagtgcacttgatgctga |
201 |
Q |
| |
|
||||||| |||||||||||||| | || ||||| ||||| || |||| || || |||||||| || || ||||| ||||| |||||||||||||| || |
|
|
| T |
29327205 |
tatctggaggacagaagcagcgcattgcgattgcaagagccatgctgaaaaaccctaaaatacttttgcttgatgaggcaacaagtgcacttgatgccga |
29327106 |
T |
|
| Q |
202 |
gtc |
204 |
Q |
| |
|
||| |
|
|
| T |
29327105 |
gtc |
29327103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 2675160 - 2675124
Alignment:
| Q |
165 |
tattactagatgaagcaactagtgcacttgatgctga |
201 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
2675160 |
tattactagatgaagcaacaagtgcacttgattctga |
2675124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 222
Target Start/End: Complemental strand, 38525381 - 38525263
Alignment:
| Q |
104 |
tctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatccaaaaatactattactagatgaagcaactagtgcacttgatgctgagt |
203 |
Q |
| |
|
||||| |||||||||||||| | || ||||| ||||| || | |||||||||| ||| ||| | || |||||||| || |||||||||||||| || | |
|
|
| T |
38525381 |
tctggtggacagaagcagcgcattgcgattgcaagagcaatccttaagaatccaagaattctacttcttgatgaagctacaagtgcacttgatgcagaat |
38525282 |
T |
|
| Q |
204 |
ctgagaaggtggtacaaga |
222 |
Q |
| |
|
|||| | |||||| ||||| |
|
|
| T |
38525281 |
ctgaaagggtggtgcaaga |
38525263 |
T |
|
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