View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20479_high_2 (Length: 741)

Name: NF20479_high_2
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20479_high_2
NF20479_high_2
[»] chr5 (1 HSPs)
chr5 (17-738)||(4947719-4948464)


Alignment Details
Target: chr5 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 17 - 738
Target Start/End: Complemental strand, 4948464 - 4947719
Alignment:
Q  17 atatataattactaaattattaatttatttacctgagcaacaatggttacatcaacaatgttgtttccaaagggcaaaaaggtactactatggacagtga 116  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4948464 atatataaatactaaattataaatttatttacctgagcaacaatggttacatcaacaatgttgtttccaaagggcaaaaaggtactactatggacagtga 4948365  T
Q  117 gattaaggttttctaatttgccaagcaccgtagcggcacgtccactgtgtttgtcacattgaatcttgattagtacatctttgcttgaaactcttacttc 216  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4948364 gattaaggttttctaattggccaagcaccgtagcggcacgtccactgtgtttgtcacattgaatcttgatgagtacatctttgcttgaaactcttacttc 4948265  T
Q  217 gatttcaggaagtggttggttattggagttgctatcatcatcattattattagtgaagataatagatctcttcacttggactgtggatccagcttttttg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4948264 gatttcaggaagtggttggttattggagttgctatcatcatcattattattagtgaagataatagatctcttcacttggactgtggatccagcttttttg 4948165  T
Q  317 ttgtcttcagcttgttcctccagtgtctgcaaacgtgcctgtagttgtttcatgtacttggtagcatctcccaacacagaagctttgtccatctgctcat 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4948164 ttgtcttcagcttgttcctccagtgtctgcaaacgtgcctgtagttgtttcatgtacttggtagcatctcccaacacagaagctttgtccatctgcacat 4948065  T
Q  417 accataatattgaatacattaactcaatgcttagtacaatataaatattgcaattgatattcaggtttaacttatctaggttaagcttgcatgtgtgtgt 516  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4948064 accataatattgaatacattaattcaatgcttagtacaatataaatattgcaattgatattcaggtttaacttatctaggttaagcttgcatgtgtgtgt 4947965  T
Q  517 ttattcactaattagtaaaattagttgcacccagtgtaagtagaacatta-------------ctcacaactataaaatttaaattatnnnnnnnnttag 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||        || |    
T  4947964 ttattcactaattagtaaaattagttgcacccagtgtaagtagaacattactcacaaacattactcacaactataaaatttaaattataaattttttttg 4947865  T
Q  604 atacc-----------taatttgatcatagaaaatgatcaataaaaacaatttttagtttctgagtaaagaaaatggaacaatttaatcccgagnnnnnn 692  Q
    || ||           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||          
T  4947864 atcccgagttgatccctaatttgatcatagaaaatgatcaataaaaacaatttttagtttctgagaaaagaaaatggaacaatttaatccctagtttttt 4947765  T
Q  693 natgtctactctttgggtccgagaaataaaagctgtcctatttctt 738  Q
     ||||||| |||||||||||||||||||||||||||||||||||||    
T  4947764 tatgtctattctttgggtccgagaaataaaagctgtcctatttctt 4947719  T

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