View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_high_20 (Length: 503)
Name: NF20479_high_20
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 451; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 9 - 487
Target Start/End: Original strand, 1537414 - 1537892
Alignment:
| Q |
9 |
agcagaggtaagtcttttaatgaggatgaaaaaagtggtgggtgtaggagggaggttaatttggtccatttcaacgatgagttgagaagcaagatcgaat |
108 |
Q |
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| T |
1537414 |
agcagagataagtcttttaatgaggatgaaaaaagtggtgggtgtaggagggaggttaatttggtccatttcaacaatgagttgcgaagcgaggtcgaat |
1537513 |
T |
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| Q |
109 |
tgatgaactttggagacaatatcgatgaggagattgtaggattgaagagagagaggtgggtttgggagagatttggagaaattgtgaagggaaagagcga |
208 |
Q |
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| T |
1537514 |
tgatgaactttggagacaatatcaatgaggagattgtaggattgaagagagagaggtgggtttgggagagatttggagaaattgtgaagggaaagagcga |
1537613 |
T |
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| Q |
209 |
ttttggagtggtgtttgaggagagttagggtttgggttaagagaattggggttagggttatgccattgagttgaagggaagattctgtgaagtggtaagg |
308 |
Q |
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| T |
1537614 |
ttttggagtggtgtttgaggagagttagggtttgggttaagagaattggggttagggttatgccattgagttgaagggaagattctgtgaagtggtaagg |
1537713 |
T |
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| Q |
309 |
gttgtggtgtgttaggagtattttggagattaattcggcgtcgttttgggtttgtgaagagattgaagagaagaagcgtgtgatggaggacttgaaattg |
408 |
Q |
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| T |
1537714 |
gttgtggtgtgttaggagtattttggagattaattcggcgtcgttttgggtttgtgaagagattgaagagaagaagcgtgtgatggaggagttgaaattg |
1537813 |
T |
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| Q |
409 |
cggtgtgagggtttcagaagaaacgccatttttgagtgaatgagacctaaagcatgagcaagaagatgaagtataaaaa |
487 |
Q |
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| T |
1537814 |
cggtgtgagggtttcagaagaaacgccatttttgagtgaatgagacctaaagcatgagcaagaagatgaagtataaaaa |
1537892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 439 - 487
Target Start/End: Original strand, 1541842 - 1541890
Alignment:
| Q |
439 |
tttgagtgaatgagacctaaagcatgagcaagaagatgaagtataaaaa |
487 |
Q |
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| T |
1541842 |
tttgagtgaatgagacttaaagcacgagcaagaagatgaagtataaaaa |
1541890 |
T |
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