View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_high_22 (Length: 484)
Name: NF20479_high_22
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 16 - 470
Target Start/End: Original strand, 40986657 - 40987110
Alignment:
| Q |
16 |
cacaaacagcatccaaacttttagacccaccgccctgcgttacaaaacatgcaccttaaacaattgatgcatttaaattttaaaacctaaaactaggaac |
115 |
Q |
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| T |
40986657 |
cacaaacagcatccaaacttttagacccaccgccctgcgttacaaaacatgcaccttaaacaattgatgcatttaaattttaaaacctaaaactaggaac |
40986756 |
T |
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| Q |
116 |
gacatggggtggaggctgcaagcaagagccttccctgcatccaactctatctatgttcatagatatttatgaacgctgataacaatttattnnnnnnnnn |
215 |
Q |
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| T |
40986757 |
gacatggggtggaggctgcaagcaagagccttccctgcatccaactctatctatgttcatatatatttatgaacgctaataacaatttattaaaaaaata |
40986856 |
T |
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| Q |
216 |
nnnnnnnnnnnnnnnngtctaattcagttcaaatgatacaaaactaattcgtattaagaacaaattcagtaaacatgacttgaatgaaaatcataaaatc |
315 |
Q |
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| T |
40986857 |
aataaaaattcaaaaagtctaattcagttcaaatgatacaaaactaattcgtattaagaagaaattcagtaaacatgacttgaatgaaaatcataaaatc |
40986956 |
T |
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| Q |
316 |
tgtctggagtgtctacttttcattaatatggaagttattgagatttatttctatgtcaatgggggttatgagacatatgatatctgattgatcaattatt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
40986957 |
tgtctggagtgtctacttttcattaatatggaagttattgagatttatttctatgtcaat-ggggttatgagacatatgatatctgattggtcaattatt |
40987055 |
T |
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| Q |
416 |
attatttttattggtcttttctctaaactcaatttaggtatactttcattcatct |
470 |
Q |
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| T |
40987056 |
attatttttattggtcttttctctaaactcaatttaggtatactttcattcatct |
40987110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 277 - 412
Target Start/End: Original strand, 40992655 - 40992788
Alignment:
| Q |
277 |
aaattcagtaaacatgacttgaatgaaaatcataaaatctgtctggagtgtctacttttcattaatatggaagttattgagatttatttctatgtcaatg |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||| ||||| ||||||||| || ||| |||||| |
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| T |
40992655 |
aaattcagtaaacatgacttgaatgaaaatcataaaatttgtctggagtgtctagttgtcattaatatagaagtcattgagattgatgtctttgtcaa-- |
40992752 |
T |
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| Q |
377 |
ggggttatgagacatatgatatctgattgatcaatt |
412 |
Q |
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||||||||||||||| |||||||||||||| |||| |
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| T |
40992753 |
ggggttatgagacatgagatatctgattgatgaatt |
40992788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 454
Target Start/End: Original strand, 40992811 - 40992855
Alignment:
| Q |
411 |
ttattattattttta-ttggtcttttctctaaactcaatttaggt |
454 |
Q |
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| T |
40992811 |
ttattattatttttaattggtcttttctctaaactcaatttaggt |
40992855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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