View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_high_23 (Length: 474)
Name: NF20479_high_23
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 25 - 463
Target Start/End: Original strand, 46112520 - 46112959
Alignment:
| Q |
25 |
gcccagtgttattttacaaaattgattacaaaatggtgaaccaccaaaaccagcacatctttcgtacaaaatgcactttggttcatcatctattgaatca |
124 |
Q |
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| T |
46112520 |
gcccagtgttattttacaaaattgattacaaaatggtgaaccaccaccaccagcacatcattcatacaaaaagcactttggttcatcatctattgaatca |
46112619 |
T |
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| Q |
125 |
actattcctgttacaataatgaaattccgttaaaaatattatctaatattttcagaaattttattgcattttcaaagatatagcaaacactttcatgaaa |
224 |
Q |
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| T |
46112620 |
actattcctgttacaataatgaaattccgttaaaaatattatctaatattttcagaaattttattgcattttcaaagatatagcaaacactttcatgaaa |
46112719 |
T |
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| Q |
225 |
acgtgattcctaaaacctgcattaaaaaagtatgcatatcaaacaccactcatttttatttatacgaaaaatttagagcaagtggactatgcctcaatct |
324 |
Q |
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| T |
46112720 |
acgtgattcctaaaacctgcattaaaaaagtatgcatatcaaacaccactcatttttatttatacgaaaaatttagagcaagtggactatacctcaatct |
46112819 |
T |
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| Q |
325 |
tatataggaaagaccttaaaa-ttttgacaacattgaccaagagatatacatttatcttaatacaaaaacattagcaagaccacaatacatgatccaatg |
423 |
Q |
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| T |
46112820 |
tatataggaaagaccttaaaatttttgacaacattgaccaagagatatacatttatcttaatacaaaaacattagcaagaccacaatatatgatccaatg |
46112919 |
T |
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| Q |
424 |
cctctttcttttatcactataccaaaacatttgagttcat |
463 |
Q |
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| T |
46112920 |
cctctttcttttatcactataccaaaacatttgagttcat |
46112959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 17449052 - 17449129
Alignment:
| Q |
90 |
acaaaatgcactttggttcatcatctattgaatcaactattcctgttacaataatgaaattccgttaaaaatattatctaa |
170 |
Q |
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| T |
17449052 |
acaaaaagcactttcgtgtagcatctgttggatcgactattcctgttacaat---gaaactccgttaaaaatattatctaa |
17449129 |
T |
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