View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_high_27 (Length: 454)
Name: NF20479_high_27
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 11 - 437
Target Start/End: Original strand, 41805493 - 41805926
Alignment:
| Q |
11 |
cagagaagatgaatgtgacaacaattgttgttgaacttaagaagtgagttgaagagctagagaagttgatggaagagaaagaggagggtatgttgaactt |
110 |
Q |
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| T |
41805493 |
cagagaagatgaatgtgacaacaattgttgttgaacttaagaagagagttgaagagctagagaagttgatggaagagaaagaggagggtatgttgaactt |
41805592 |
T |
|
| Q |
111 |
gggagaggaaaagagggaggccatcaggcagctttgtttgcggattgattatcacagggagcgcaatgactatctaaaggaattcatatcaaagactcgc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41805593 |
gggagaggaaaagagggaggccatcaggcagctttgtttgcggattgattatcacagggagcgcaatgactatctaaaggaattcatatcaaagactcgc |
41805692 |
T |
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| Q |
211 |
cggggccagagagcaatgtgaacccatctata-nnnnnnnatgcaactttgtccaattaggtactgtcgtgatttgacaaacatgagtatgtgtatagtt |
309 |
Q |
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| T |
41805693 |
cggggccagagagcagtgtgaacccatctatattttttttatgcaactttgtccaattaggtactgtcgtgatttgacaaacatgagtatgtgtatagtt |
41805792 |
T |
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| Q |
310 |
atannnnnnnccctgtat------caaagttagttctgttcttctcttgaatttgaattgaataatcttagtgacgtcttattgttttgttcagtataga |
403 |
Q |
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||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41805793 |
atatttttttccctgtatcagtagcaaagttagttctgttcttctcttgaatttgaattgaataatcttagtgacgtcttattgttttgttcagtataga |
41805892 |
T |
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| Q |
404 |
acgttgggttaacatgtcccactatcaaaatttt |
437 |
Q |
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| T |
41805893 |
acgctgggttaacatgtcccactatcaaaatttt |
41805926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 41799107 - 41799321
Alignment:
| Q |
11 |
cagagaagatgaatgtgacaacaattgttgttgaacttaagaagtgagttgaagagctagagaagttgatggaagagaaagaggagggtatgttgaactt |
110 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||||||||||| |||| ||||||||||||| || || ||| | || |
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| T |
41799107 |
cagagaagatgaatgtgacagcaactgttgttgaacttaagaagacagttggagagctagagaagtcgatgaaagagaaagaggaaggcatattggattt |
41799206 |
T |
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| Q |
111 |
gggagaggaaaagagggaggccatcaggcagctttgtttgcggattgattatcacagggagcgcaatgactatctaaaggaattcatatcaaagactcgc |
210 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |||||||||||||| | ||| | | |||| ||| |||||| ||||||||||||| ||| |
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| T |
41799207 |
gggagaggaaaagagggaggccatcaggcagctctgtttgtggattgattatcaccgtgagagtagtgaccgtctcaaggaaatcatatcaaagacacgc |
41799306 |
T |
|
| Q |
211 |
cggggccagagagca |
225 |
Q |
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| T |
41799307 |
aggggccagagagca |
41799321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 41812323 - 41812535
Alignment:
| Q |
11 |
cagagaagatgaatgtgacaacaattgttgttgaacttaagaagtgagttgaagagctagagaagttgatggaagagaaagaggagggtatgttgaactt |
110 |
Q |
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|||||||||||||||||||| ||| ||||| ||||||||||||| ||||||||||||| |||||||||| ||||||||||||| || || ||| | || |
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| T |
41812323 |
cagagaagatgaatgtgacagcaactgttgatgaacttaagaagacagttgaagagctacagaagttgataaaagagaaagaggaaggaatattggattt |
41812422 |
T |
|
| Q |
111 |
gggagaggaaaagagggaggccatcaggcagctttgtttgcggattgattatcacagggagcgcaatgactatctaaaggaattcatatcaaagactcgc |
210 |
Q |
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||||||||||||||||||||||||||||||||| |||||| ||||||||||||| | ||| | |||| |||||| |||| | |||| |||||||||| |
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| T |
41812423 |
gggagaggaaaagagggaggccatcaggcagctctgtttgttgattgattatcaccgcgagtgtaatgtctatctcaagggaatcatctcaaagactcaa |
41812522 |
T |
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| Q |
211 |
cggggccagagag |
223 |
Q |
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|||||||||||| |
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| T |
41812523 |
aggggccagagag |
41812535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 331 - 424
Target Start/End: Original strand, 41799488 - 41799581
Alignment:
| Q |
331 |
agttagttctgttcttctcttgaatttgaattgaataatcttagtgacgtcttattgttttgttcagtatagaacgttgggttaacatgtccca |
424 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||| | ||||||||||| |
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| T |
41799488 |
agttagtcctgttcttctcttgaatttgaattgaataatcttagtgaggtcttattgttttgttcagtatacaaatttggatgaacatgtccca |
41799581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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