View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20479_high_28 (Length: 453)
Name: NF20479_high_28
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_high_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 256
Target Start/End: Complemental strand, 43571928 - 43571680
Alignment:
| Q |
7 |
tgtgtagggctaagttatttcggtttaataatacttggctagtnnnnnnnnttataagaaaggatttgtgttgaaagnnnnnnnttaagattactgaaat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43571928 |
tgtgtagggctaagttatttcggtttaataatacttggctagtaaaaaaaattataagaaaggatttgtgttgaaagaaaaaa-ttaagattactgaaat |
43571830 |
T |
|
| Q |
107 |
ttggatattttggtagtcttgttgtgaaatttcaacatgtttattggaaaattgaactggctgatttcaagaccgagaatgtttggtttctcctcggaag |
206 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43571829 |
ttggatattttggtagtattgttgtgaaatttcaacatgtttattggaaaattgaactggctgatttcaagaccgagaatgtttggtttctcctcggaag |
43571730 |
T |
|
| Q |
207 |
aaagaaatcaaagatatatgattatctagtgtatgtttagttaagtggtt |
256 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43571729 |
aaagaaatcaaagatatatgattatttagtgtatgtttagttaagtggtt |
43571680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 352 - 441
Target Start/End: Complemental strand, 43571573 - 43571484
Alignment:
| Q |
352 |
tgtttggatacattcaagtgagttgaaatgtgaatttggatacaaaaatcaactctagaatcaaaagttaaaaattatagcttcaagtat |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43571573 |
tgtttggatacattcaagtgagttgaaatgtgaatttggatacaaaaatcaactctagaattaaaagttaaaaattatagcttcaagtat |
43571484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 440
Target Start/End: Complemental strand, 16644030 - 16643985
Alignment:
| Q |
395 |
aaaaatcaactctagaatcaaaagttaaaaattatagcttcaagta |
440 |
Q |
| |
|
||||||||| ||||||||||||| || |||||||||||||||||| |
|
|
| T |
16644030 |
aaaaatcaattctagaatcaaaatctataaattatagcttcaagta |
16643985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 440
Target Start/End: Complemental strand, 9818786 - 9818741
Alignment:
| Q |
395 |
aaaaatcaactctagaatcaaaagttaaaaattatagcttcaagta |
440 |
Q |
| |
|
||||||||| |||||||||||||| || |||| ||||||||||||| |
|
|
| T |
9818786 |
aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagta |
9818741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 440
Target Start/End: Complemental strand, 4910959 - 4910915
Alignment:
| Q |
396 |
aaaatcaactctagaatcaaaagttaaaaattatagcttcaagta |
440 |
Q |
| |
|
|||||||| |||||||||||||| || |||| ||||||||||||| |
|
|
| T |
4910959 |
aaaatcaattctagaatcaaaagctacaaatcatagcttcaagta |
4910915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 427
Target Start/End: Complemental strand, 32596071 - 32596011
Alignment:
| Q |
367 |
aagtgagttgaaatgtgaatttggatacaaaaatcaactctagaatcaaaagttaaaaatt |
427 |
Q |
| |
|
|||||||||||| | |||||||| || ||||||||| | ||||||||||||||| ||||| |
|
|
| T |
32596071 |
aagtgagttgaattatgaatttgtatgtaaaaatcaattttagaatcaaaagttacaaatt |
32596011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University