View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20479_high_35 (Length: 402)

Name: NF20479_high_35
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20479_high_35
NF20479_high_35
[»] chr3 (4 HSPs)
chr3 (18-384)||(1726397-1726763)
chr3 (267-346)||(13361622-13361701)
chr3 (267-346)||(13293506-13293585)
chr3 (22-84)||(13293218-13293280)
[»] chr7 (1 HSPs)
chr7 (248-343)||(4447384-4447479)
[»] chr4 (2 HSPs)
chr4 (273-346)||(11450232-11450305)
chr4 (267-315)||(12407100-12407148)
[»] chr6 (2 HSPs)
chr6 (132-204)||(17235817-17235888)
chr6 (315-359)||(17235652-17235696)
[»] chr2 (1 HSPs)
chr2 (273-315)||(22677941-22677983)
[»] chr1 (1 HSPs)
chr1 (265-315)||(23976337-23976387)
[»] chr8 (1 HSPs)
chr8 (255-359)||(17932289-17932393)


Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 384
Target Start/End: Original strand, 1726397 - 1726763
Alignment:
Q  18 cattgagaatctaataagttatctcaactgtcatgagatggagcttgttggagatgaacccgctaagggaaatctactaagctcttcaagttgttgagtc 117  Q
    ||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1726397 cattgagaatctaataagttacctcaagtatcatgagatggagcttgttggagatgaatccgctaagggaaatctactaagctcttcaagttgttgagtc 1726496  T
Q  118 agaagagactctagatggagaatctgaagatgggttagatgctgaagagatgacatttctgaccaaaatatttaagtaccttaccaagaagaaaaatgtt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||| |||||||||||||||||||||||||||    
T  1726497 agaagagactctagatggagaatctgaagatgggttagatgctga---------atttctgaccaaaatattcaagtaccttaccaagaagaaaaatgtt 1726587  T
Q  218 tccaactagaactagtggatctaaaggatcaggctac---------aaggatgattagaagggttgcttcaacagcaagaaacatgatcacttcattgct 308  Q
    |||||||||||||||||||||||||||||||| ||||         ||||||||||||||||||| ||||||||||||||||| || |||||||||||||    
T  1726588 tccaactagaactagtggatctaaaggatcagactacaaggatgagaaggatgattagaagggtttcttcaacagcaagaaacctggtcacttcattgct 1726687  T
Q  309 gattgtctagagttgcagacggacaagtcaaagaaggaaatctctaagaagtaaagattcaaaattagagtcaaga 384  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  1726688 gattgtctagagttgcagacgaacaagtcaaagaaggaaatctctaagaaataaagattcaaaattagattcaaga 1726763  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 346
Target Start/End: Complemental strand, 13361701 - 13361622
Alignment:
Q  267 aagggttgcttcaacagcaagaaacatgatcacttcattgctgattgtctagagttgcagacggacaagtcaaagaagga 346  Q
    ||||||||||||  | ||||||||| || ||| ||||||||||||||||||||||| ||||  |||||||||||||||||    
T  13361701 aagggttgcttccgctgcaagaaacttggtcatttcattgctgattgtctagagttacagaaagacaagtcaaagaagga 13361622  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 346
Target Start/End: Original strand, 13293506 - 13293585
Alignment:
Q  267 aagggttgcttcaacagcaagaaacatgatcacttcattgctgattgtctagagttgcagacggacaagtcaaagaagga 346  Q
    ||||||||||||  | ||||||||| || ||| ||||||||||| ||||||||||| ||||  ||||||| |||||||||    
T  13293506 aagggttgcttccgctgcaagaaacttggtcatttcattgctgactgtctagagttacagaaagacaagtgaaagaagga 13293585  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 13293218 - 13293280
Alignment:
Q  22 gagaatctaataagttatctcaactgtcatgagatggagcttgttggagatgaacccgctaag 84  Q
    |||||||| ||||| |  ||||| | ||||||||| |||||||||||||||||||| ||||||    
T  13293218 gagaatctgataagctccctcaaatatcatgagattgagcttgttggagatgaacctgctaag 13293280  T

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Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 248 - 343
Target Start/End: Complemental strand, 4447479 - 4447384
Alignment:
Q  248 aggctacaaggatgattagaagggttgcttcaacagcaagaaacatgatcacttcattgctgattgtctagagttgcagacggacaagtcaaagaa 343  Q
    |||||| || ||| || ||||||| ||||||||| ||||||||| ||||||||||||| |||| |||||||||||||||| |||||||||||||||    
T  4447479 aggctagaaagataatcagaagggatgcttcaactgcaagaaacctgatcacttcattactgactgtctagagttgcagaaggacaagtcaaagaa 4447384  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 346
Target Start/End: Original strand, 11450232 - 11450305
Alignment:
Q  273 tgcttcaacagcaagaaacatgatcacttcattgctgattgtctagagttgcagacggacaagtcaaagaagga 346  Q
    ||||||||||||||||||| |||||| ||||||| |||||||| |||||| |||| ||||||||| ||||||||    
T  11450232 tgcttcaacagcaagaaacttgatcatttcattgttgattgtccagagttacagaaggacaagtcgaagaagga 11450305  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 315
Target Start/End: Original strand, 12407100 - 12407148
Alignment:
Q  267 aagggttgcttcaacagcaagaaacatgatcacttcattgctgattgtc 315  Q
    ||||| ||||||||| | ||||||| || ||||||||||||||||||||    
T  12407100 aagggatgcttcaactgtaagaaacctggtcacttcattgctgattgtc 12407148  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 17235888 - 17235817
Alignment:
Q  132 atggagaatctgaagatgggttagatgctgaagagatgacatttctgaccaaaatatttaagtaccttaccaa 204  Q
    ||||||||||||||||||  ||||||||| |||||||||||||||||||||||| || | ||||||| |||||    
T  17235888 atggagaatctgaagatga-ttagatgctaaagagatgacatttctgaccaaaagatatcagtacctgaccaa 17235817  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 359
Target Start/End: Complemental strand, 17235696 - 17235652
Alignment:
Q  315 ctagagttgcagacggacaagtcaaagaaggaaatctctaagaag 359  Q
    ||||||||||||| |||| || ||||||| |||||||||||||||    
T  17235696 ctagagttgcagaaggacgagccaaagaaagaaatctctaagaag 17235652  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 22677983 - 22677941
Alignment:
Q  273 tgcttcaacagcaagaaacatgatcacttcattgctgattgtc 315  Q
    ||||||||| ||||||||| || ||||||||||||||||||||    
T  22677983 tgcttcaactgcaagaaacttggtcacttcattgctgattgtc 22677941  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 23976337 - 23976387
Alignment:
Q  265 agaagggttgcttcaacagcaagaaacatgatcacttcattgctgattgtc 315  Q
    ||||||| ||||||||| ||||||||  || ||||||||||||||||||||    
T  23976337 agaagggatgcttcaactgcaagaaatctggtcacttcattgctgattgtc 23976387  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 359
Target Start/End: Original strand, 17932289 - 17932393
Alignment:
Q  255 aaggatgattagaagggttgcttcaacagcaagaaacatgatcacttcattgctgattgtctagagttgcagacggacaagtcaaagaaggaaatctcta 354  Q
    ||||||||| |||||||||||||| || ||||||| | || |||| | ||| ||  ||||| ||| ||||| | ||||||||  ||||| |||| |||||    
T  17932289 aaggatgatcagaagggttgcttccactgcaagaagcctggtcacgtgattacttgttgtccagatttgcaaaaggacaagtgtaagaaagaaagctcta 17932388  T
Q  355 agaag 359  Q
    |||||    
T  17932389 agaag 17932393  T

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