View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_high_43 (Length: 367)
Name: NF20479_high_43
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_high_43 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 8 - 349
Target Start/End: Original strand, 896815 - 897157
Alignment:
| Q |
8 |
aatgagacgtataattggtacattgaacaccagaatcttgctgctattgagtaacaacaaatgcaacaactattgacc-cttagggtaatcaaaagcctt |
106 |
Q |
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| T |
896815 |
aatgaaacgtataattggtacattgaacaccagaatcttgctgctattgagtaacaacaaatgcaacaactattgacatcttagggtaatcaaaagcctt |
896914 |
T |
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| Q |
107 |
aagacaacacaaatcaaataacacaataaaattgttaagacaacacaaatcaatacctaaaccaaagtggtgtcctaagatttaatagtccaatctcaat |
206 |
Q |
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| T |
896915 |
acgacaacacaaatcaaataacacaataaaaatgttaagacaacacaaatcaatacctcaaccaaagtggtgtcctaagatttaatagtccaatctcaat |
897014 |
T |
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| Q |
207 |
cctacatgtctcataacctactcggaaacacggaaggttttgagttaagacgtgagtgttcaattgtcggtcaaatgcaatgatcatgagccccctcatg |
306 |
Q |
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| T |
897015 |
cctacatgtatcataacctactcggaaacacggaaggttttgagttaagacgtgagtgttcaattgtcggtcaaatgcaatgatcatgagccccctcatg |
897114 |
T |
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| Q |
307 |
atccaatgaccaatcaaaggtttgatccgcgccaggtaaatct |
349 |
Q |
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| T |
897115 |
atccaatgaccaatcaaaggtttgatccgtgccaggtaaatct |
897157 |
T |
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