View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20479_high_45 (Length: 364)

Name: NF20479_high_45
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20479_high_45
NF20479_high_45
[»] chr4 (3 HSPs)
chr4 (15-345)||(2886393-2886723)
chr4 (16-166)||(2897652-2897800)
chr4 (300-340)||(2897983-2898023)
[»] chr7 (8 HSPs)
chr7 (31-71)||(39337959-39337999)
chr7 (31-71)||(39349136-39349176)
chr7 (31-71)||(39564839-39564879)
chr7 (31-73)||(39575493-39575535)
chr7 (44-75)||(39589743-39589774)
chr7 (43-75)||(39365605-39365637)
chr7 (43-75)||(39538633-39538665)
chr7 (43-75)||(39547997-39548029)
[»] chr2 (3 HSPs)
chr2 (19-71)||(44211424-44211476)
chr2 (19-71)||(44223586-44223638)
chr2 (19-71)||(44234408-44234460)


Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 15 - 345
Target Start/End: Complemental strand, 2886723 - 2886393
Alignment:
Q  15 agaatatacaacatcgtcaaaggctatagaatgtggttcaaaaggaagaaccattcctcttctctctctttggctggggtccgcaccatttgatcctcct 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2886723 agaatatacaacatcgtcaaaggctatagaatgtggttcaaaaggaagaaccattcctcttctctctctttggctagggtccgcaccatttgatcctcct 2886624  T
Q  115 gaacttgctgcataacaattgcaaatatgttaagattctaaagccattatgaggcatgaaagaacatcattatagaaaactgagatcccagccctaacaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2886623 gaacttgctgcataacaattgcaaatatgttaagattctaaagccattatgaggcatgaaagaacatcattatagaaaactgagatcccagccctaacaa 2886524  T
Q  215 taatcaagactacacccaaataatattaaataaaatcaaaatgcattataaatcactaatgaactagttcaaacacataaaagtagcatgtttatattga 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2886523 taatcaagactacacccaaataatattaaataaaatcaaaatgcattataaatcactaatgaactagttcaaacacataaaagtagcatgtttatattga 2886424  T
Q  315 gttttcacgagtggtatgaaaaagatagatc 345  Q
    |||||||||||||||||||||||||||||||    
T  2886423 gttttcacgagtggtatgaaaaagatagatc 2886393  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 2897652 - 2897800
Alignment:
Q  16 gaatatacaacatcgtcaaaggctatagaatgtggttcaaaaggaagaaccattcctcttctctctctttggctggggtccgcaccatttgatcctcctg 115  Q
    ||||||||||| | |||||||  |||||||||||||||||||||||||| |||||| ||| ||| ||| | ||||| |  | || |||   || |||||     
T  2897652 gaatatacaacttggtcaaagattatagaatgtggttcaaaaggaagaatcattccccttttctttctgttgctggagctcacaacat---attctccta 2897748  T
Q  116 aacttgctgcataacaattgcaaa-tatgttaagattctaaagccattatga 166  Q
    |||| ||||| ||||||||| ||| | |||||||||||||||| ||||||||    
T  2897749 aactagctgcgtaacaattggaaattttgttaagattctaaagacattatga 2897800  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 2897983 - 2898023
Alignment:
Q  300 gcatgtttatattgagttttcacgagtggtatgaaaaagat 340  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  2897983 gcatgtttatattgagttttcatgaatggtatgaaaaagat 2898023  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 39337999 - 39337959
Alignment:
Q  31 tcaaaggctatagaatgtggttcaaaaggaagaaccattcc 71  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  39337999 tcaaaggttatagaatgtggttcaaaaggaagaaccattcc 39337959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 39349176 - 39349136
Alignment:
Q  31 tcaaaggctatagaatgtggttcaaaaggaagaaccattcc 71  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  39349176 tcaaaggttatagaatgtggttcaaaaggaagaaccattcc 39349136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 39564839 - 39564879
Alignment:
Q  31 tcaaaggctatagaatgtggttcaaaaggaagaaccattcc 71  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  39564839 tcaaaggttatagaatgtggttcaaaaggaagaaccattcc 39564879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 39575493 - 39575535
Alignment:
Q  31 tcaaaggctatagaatgtggttcaaaaggaagaaccattcctc 73  Q
    ||||||| |||||||||| ||||||||||||||||||||||||    
T  39575493 tcaaaggttatagaatgttgttcaaaaggaagaaccattcctc 39575535  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 39589743 - 39589774
Alignment:
Q  44 aatgtggttcaaaaggaagaaccattcctctt 75  Q
    ||||||||||||||||||||||||||||||||    
T  39589743 aatgtggttcaaaaggaagaaccattcctctt 39589774  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 39365637 - 39365605
Alignment:
Q  43 gaatgtggttcaaaaggaagaaccattcctctt 75  Q
    |||||||||||||| ||||||||||||||||||    
T  39365637 gaatgtggttcaaatggaagaaccattcctctt 39365605  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 39538633 - 39538665
Alignment:
Q  43 gaatgtggttcaaaaggaagaaccattcctctt 75  Q
    |||||||||||||| ||||||||||||||||||    
T  39538633 gaatgtggttcaaatggaagaaccattcctctt 39538665  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 39547997 - 39548029
Alignment:
Q  43 gaatgtggttcaaaaggaagaaccattcctctt 75  Q
    ||||||||||||||||| |||||||||||||||    
T  39547997 gaatgtggttcaaaagggagaaccattcctctt 39548029  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 44211424 - 44211476
Alignment:
Q  19 tatacaacatcgtcaaaggctatagaatgtggttcaaaaggaagaaccattcc 71  Q
    ||||||| ||| ||||| |  ||||||||||||||||| ||||||||||||||    
T  44211424 tatacaatatcatcaaaagtgatagaatgtggttcaaatggaagaaccattcc 44211476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 44223586 - 44223638
Alignment:
Q  19 tatacaacatcgtcaaaggctatagaatgtggttcaaaaggaagaaccattcc 71  Q
    ||||||| ||| ||||| |  ||||||||||||||||| ||||||||||||||    
T  44223586 tatacaatatcatcaaaagtgatagaatgtggttcaaatggaagaaccattcc 44223638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 44234408 - 44234460
Alignment:
Q  19 tatacaacatcgtcaaaggctatagaatgtggttcaaaaggaagaaccattcc 71  Q
    ||||||| ||| ||||| |  ||||||||||||||||| ||||||||||||||    
T  44234408 tatacaatatcatcaaaagtgatagaatgtggttcaaatggaagaaccattcc 44234460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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