View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20479_high_51 (Length: 342)

Name: NF20479_high_51
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20479_high_51
NF20479_high_51
[»] chr7 (9 HSPs)
chr7 (207-324)||(6778714-6778831)
chr7 (207-324)||(6774427-6774544)
chr7 (211-324)||(37476091-37476204)
chr7 (211-324)||(37480613-37480726)
chr7 (14-138)||(6774613-6774737)
chr7 (76-138)||(6778900-6778962)
chr7 (58-123)||(37475455-37475520)
chr7 (55-94)||(37466177-37466216)
chr7 (211-320)||(37466296-37466405)
[»] chr8 (2 HSPs)
chr8 (208-320)||(37362791-37362903)
chr8 (208-320)||(37365150-37365262)
[»] chr1 (1 HSPs)
chr1 (211-324)||(45071567-45071680)
[»] chr3 (1 HSPs)
chr3 (207-320)||(50915256-50915369)
[»] chr5 (2 HSPs)
chr5 (213-324)||(8992568-8992679)
chr5 (213-278)||(8983216-8983281)
[»] chr4 (5 HSPs)
chr4 (213-289)||(5646999-5647075)
chr4 (217-308)||(11160873-11160964)
chr4 (213-281)||(11174924-11174992)
chr4 (213-281)||(11182374-11182442)
chr4 (213-314)||(11179053-11179154)


Alignment Details
Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 207 - 324
Target Start/End: Complemental strand, 6778831 - 6778714
Alignment:
Q  207 tttcattcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaatattaaaagtcgctcgaatttcctcc 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||    
T  6778831 tttcattcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttgatattaaaagtctttcgaatttcctcc 6778732  T
Q  307 ggtgtcttccctttgatc 324  Q
    ||||||||||||||||||    
T  6778731 ggtgtcttccctttgatc 6778714  T

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Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 207 - 324
Target Start/End: Complemental strand, 6774544 - 6774427
Alignment:
Q  207 tttcattcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaatattaaaagtcgctcgaatttcctcc 306  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||    
T  6774544 tttcattcattcaactgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttgatattaaaagtctttcgaatttcctcc 6774445  T
Q  307 ggtgtcttccctttgatc 324  Q
    ||||||||||||||||||    
T  6774444 ggtgtcttccctttgatc 6774427  T

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Target: chr7; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 211 - 324
Target Start/End: Original strand, 37476091 - 37476204
Alignment:
Q  211 attcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaatattaaaagtcgctcgaatttcctccggtg 310  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||| ||||    
T  37476091 attcattcaaatgcccattgattttccctgcgaacttcttcctcttcctccggagtgaaatcattcttgatattaaaagtctttcgaatttcctctggtg 37476190  T
Q  311 tcttccctttgatc 324  Q
    ||||||||||||||    
T  37476191 tcttccctttgatc 37476204  T

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Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 211 - 324
Target Start/End: Original strand, 37480613 - 37480726
Alignment:
Q  211 attcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaatattaaaagtcgctcgaatttcctccggtg 310  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||  ||||||||||||||| |    
T  37480613 attcattcaaatgcccattgattttccctacgaatttcttcctcttcctccgaagtgaaatcattcttgatattaaaagtctttcgaatttcctccggcg 37480712  T
Q  311 tcttccctttgatc 324  Q
    ||||||||||||||    
T  37480713 tcttccctttgatc 37480726  T

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Target: chr7; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 6774737 - 6774613
Alignment:
Q  14 agaagaaacatatcctagactagaaagtcactnnnnnnnngcagaaacagaaactagaagagaacacatcctagactaatgtcatctatcaagtgaacat 113  Q
    ||||||||||||||||||||||||||||||||        ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6774737 agaagaaacatatcctagactagaaagtcactaaaaaaaagcagaaacacaaactagaagagaacacatcctagactagtgtcatctatcaagtgaacat 6774638  T
Q  114 agtccattcaataccaagcagcatg 138  Q
    |||||||||| ||||||||||||||    
T  6774637 agtccattcactaccaagcagcatg 6774613  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 6778962 - 6778900
Alignment:
Q  76 aacacatcctagactaatgtcatctatcaagtgaacatagtccattcaataccaagcagcatg 138  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||    
T  6778962 aacacatcctagactagtgtcatctatcaagtgaacatagtccattcactaacaagcagcatg 6778900  T

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Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 37475455 - 37475520
Alignment:
Q  58 aaacagaaactagaagagaacacatcctagactaatgtcatctatcaagtgaacatagtccattca 123  Q
    ||||| |||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  37475455 aaacacaaactaaaagagaacacatcctagactagtgtcatctattaagtgaacatagtccattca 37475520  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 94
Target Start/End: Original strand, 37466177 - 37466216
Alignment:
Q  55 cagaaacagaaactagaagagaacacatcctagactaatg 94  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  37466177 cagaaacacaaactagaagagaacacatcctatactaatg 37466216  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 320
Target Start/End: Original strand, 37466296 - 37466405
Alignment:
Q  211 attcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaatattaaaagtcgctcgaatttcctccggtg 310  Q
    |||||||||||||||||||  |||||   ||||| | || | |||||||| ||| ||||||||||||| || |||||  || | || |||||||| || |    
T  37466296 attcattcaaatgcccatttgttttctgcacgaattgctgcttcttcctctggactgaaatcattcttgatgttaaacatctcacgcatttcctcgggcg 37466395  T
Q  311 tcttcccttt 320  Q
    ||||||||||    
T  37466396 tcttcccttt 37466405  T

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Target: chr8 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 208 - 320
Target Start/End: Original strand, 37362791 - 37362903
Alignment:
Q  208 ttcattcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaatattaaaagtcgctcgaatttcctccg 307  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||| ||||||||| |||||    
T  37362791 ttcattcattcaaatacccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttgatgtgaaaagtctctcgaatttgctccg 37362890  T
Q  308 gtgtcttcccttt 320  Q
    |||||||||||||    
T  37362891 gtgtcttcccttt 37362903  T

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Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 208 - 320
Target Start/End: Complemental strand, 37365262 - 37365150
Alignment:
Q  208 ttcattcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaatattaaaagtcgctcgaatttcctccg 307  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| || | ||||||| ||||||||| |||||    
T  37365262 ttcattcattcaaatgcccattggttttccctacgaacttcttccttttcctccggagtgaaatcattcttgatgtgaaaagtctctcgaatttgctccg 37365163  T
Q  308 gtgtcttcccttt 320  Q
    |||||||||||||    
T  37365162 gtgtcttcccttt 37365150  T

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Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 211 - 324
Target Start/End: Original strand, 45071567 - 45071680
Alignment:
Q  211 attcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaatattaaaagtcgctcgaatttcctccggtg 310  Q
    ||||||||||||||||||||||||||||  ||||||||||| ||||||| |||||||||||||||||| || |||||||||  |||||||||||||||||    
T  45071567 attcattcaaatgcccattgattttcccagcgaacttcttcttcttccttcggagtgaaatcattcttgatgttaaaagtctttcgaatttcctccggtg 45071666  T
Q  311 tcttccctttgatc 324  Q
    ||||||||||||||    
T  45071667 tcttccctttgatc 45071680  T

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Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 207 - 320
Target Start/End: Complemental strand, 50915369 - 50915256
Alignment:
Q  207 tttcattcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaatattaaaagtcgctcgaatttcctcc 306  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||  || ||||||||   |||||||||||||    
T  50915369 tttcattcattcaaatgcccattgattttcccttcgaacttcttcctcttcctgcggagtgaaatcgttctcgatgttaaaagtgtttcgaatttcctcc 50915270  T
Q  307 ggtgtcttcccttt 320  Q
    ||||||||||||||    
T  50915269 ggtgtcttcccttt 50915256  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 213 - 324
Target Start/End: Complemental strand, 8992679 - 8992568
Alignment:
Q  213 tcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaatattaaaagtcgctcgaatttcctccggtgtc 312  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||| || | ||||||||||||||| ||||| |||   ||||| ||||| ||||||    
T  8992679 tcattcaaatgcccattggttttccctacgaacttcctcctcttcctctggtgagaaatcattcttaatgttaaaggtcttgcgaatctcctcaggtgtc 8992580  T
Q  313 ttccctttgatc 324  Q
    ||||| ||||||    
T  8992579 ttccccttgatc 8992568  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 213 - 278
Target Start/End: Complemental strand, 8983281 - 8983216
Alignment:
Q  213 tcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattctt 278  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||| || | ||| ||||||||    
T  8983281 tcattcaaatgcccattggttttccctacgaacttcctcctcttcctcaggtgagaagtcattctt 8983216  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 5647075 - 5646999
Alignment:
Q  213 tcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaatattaaaag 289  Q
    |||||| || ||||||||||||||| ||||||  || |||||||||||||||| ||||||||||  ||| |||||||    
T  5647075 tcattctaaagcccattgattttccttacgaatctcctcctcttcctccggagagaaatcattcgcaatcttaaaag 5646999  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 308
Target Start/End: Complemental strand, 11160964 - 11160873
Alignment:
Q  217 tcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaatattaaaagtcgctcgaatttcctccgg 308  Q
    ||||| ||||||||| |||| ||||| ||||| |||||||||||||||||| |||||||  |||| || ||||||   ||||| ||||||||    
T  11160964 tcaaaagcccattgagtttcgctacggacttcctcctcttcctccggagtgtaatcattaataatgttgaaagtcttacgaatctcctccgg 11160873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 11174992 - 11174924
Alignment:
Q  213 tcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaat 281  Q
    ||||||||| |||||||||||||| ||||||| ||  | ||||||||| ||| || |||||||||||||    
T  11174992 tcattcaaaagcccattgattttcgctacgaattttctgctcttcctcaggactgtaatcattcttaat 11174924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 11182442 - 11182374
Alignment:
Q  213 tcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaat 281  Q
    ||||||||| |||||||||||||| ||||||| ||  | ||||||||| ||| || |||||||||||||    
T  11182442 tcattcaaaagcccattgattttcgctacgaattttctgctcttcctcgggactgtaatcattcttaat 11182374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 314
Target Start/End: Original strand, 11179053 - 11179154
Alignment:
Q  213 tcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaatattaaaagtcgctcgaatttcctccggtgtc 312  Q
    ||||||||| |||||   |||||| | ||||||||| ||||||||||| || ||| ||||||||||||| || ||| ||   ||||| ||||| ||||||    
T  11179053 tcattcaaaagcccaactattttcgcgacgaacttcctcctcttcctctggggtgtaatcattcttaatgttgaaaatcttgcgaatctcctctggtgtc 11179152  T
Q  313 tt 314  Q
    ||    
T  11179153 tt 11179154  T

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