View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_high_55 (Length: 333)
Name: NF20479_high_55
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_high_55 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 2 - 316
Target Start/End: Complemental strand, 29794692 - 29794378
Alignment:
| Q |
2 |
ttaaatctataggtggagtaaacatataagtgaagaatttggcgcgaaatcttctgtgtcgaaaacagccatggctactactactccaactccaccatgc |
101 |
Q |
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| T |
29794692 |
ttaaatctataggtggagtaaacatataagtgtagaatttggcgcgaaatcttctgtgtcgaaaacagccatggctactactactccaactccaccatgc |
29794593 |
T |
|
| Q |
102 |
agcgttcattcaatgcaatgaagaaaatgggaatttcccgaataaaccccaacgatctatctcatcatcttcgtcagaagaaagctaagttcattgctcc |
201 |
Q |
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| T |
29794592 |
agcgttcattcaatgcaatgaagaaaatgggaatttcccgaataaaccccaacgatctatctcatcatcttcgtcagaagaaagctaagttcattgctcc |
29794493 |
T |
|
| Q |
202 |
tcatgaaaaacaaaaccctagatttgaagaagaaccagatcattcttctcacattccattacagagagaaaatgttacaacatgtaagcttatgaattta |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29794492 |
tcatgaaaaacaaaaccctagatttgaagaagaaccagatcattcttctcacattccattacagagagaaaatgttacaacatgtaagcttatgaattta |
29794393 |
T |
|
| Q |
302 |
acctaatgcatgcgt |
316 |
Q |
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||||||||||||||| |
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| T |
29794392 |
acctaatgcatgcgt |
29794378 |
T |
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