View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20479_high_56 (Length: 332)

Name: NF20479_high_56
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20479_high_56
NF20479_high_56
[»] chr1 (1 HSPs)
chr1 (22-311)||(41168491-41168780)


Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 22 - 311
Target Start/End: Complemental strand, 41168780 - 41168491
Alignment:
Q  22 aggggattaaaacctgatgataaatataagtgtggagtattttgtttagattccaataacctcttggcaatcacctacaaaacagtcaaatatttgagat 121  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41168780 aggggattaaaacctgatgataaatataagtgtggtgtattttgtttagattccaataacctcttggcaatcacctacaaaacagtcaaatatttgagat 41168681  T
Q  122 gagtggaaggaagcagagttgaaatatagtccattaattatcaattttcctaagtatttaggtagtagagatgtaaatagaaaggacatgacatccataa 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41168680 gagtggaaggaagcagagttgaaatatagtccattaattatcaattttcctaagtatttaggtagtagagatgtaaatagaaaggacatgacatccataa 41168581  T
Q  222 tcgaacaaaaacattacaaaactgagctctgcatgtacaacaatggccaagtattaccaaaacaatatgctgaatgtactatatagaggc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41168580 tcgaacaaaaacattacaaaactgagctctgcatgtacaacaatggccaagtattaccaaaacaatatgctgaatgtactatatagaggc 41168491  T

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