View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20479_high_58 (Length: 325)

Name: NF20479_high_58
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20479_high_58
NF20479_high_58
[»] scaffold0257 (1 HSPs)
scaffold0257 (19-317)||(19054-19355)
[»] chr3 (25 HSPs)
chr3 (27-313)||(28185907-28186193)
chr3 (33-295)||(28149961-28150223)
chr3 (27-295)||(28161864-28162132)
chr3 (100-307)||(28479737-28479944)
chr3 (100-305)||(28508922-28509127)
chr3 (33-227)||(28151644-28151837)
chr3 (27-280)||(28037427-28037680)
chr3 (60-227)||(17744448-17744615)
chr3 (60-227)||(19045768-19045935)
chr3 (40-316)||(27458710-27458982)
chr3 (27-227)||(11420976-11421175)
chr3 (27-151)||(27776510-27776634)
chr3 (57-227)||(27920260-27920432)
chr3 (57-196)||(27954345-27954483)
chr3 (100-304)||(28136378-28136577)
chr3 (31-115)||(28056536-28056620)
chr3 (31-115)||(28066961-28067045)
chr3 (57-227)||(8539210-8539383)
chr3 (238-317)||(28056627-28056706)
chr3 (238-317)||(28067052-28067131)
chr3 (27-76)||(28479947-28479996)
chr3 (27-76)||(28509130-28509179)
chr3 (114-163)||(27349214-27349263)
chr3 (114-163)||(27378552-27378601)
chr3 (111-157)||(26629631-26629677)
[»] chr2 (2 HSPs)
chr2 (41-261)||(8020834-8021052)
chr2 (114-163)||(22393525-22393574)
[»] scaffold0043 (1 HSPs)
scaffold0043 (114-163)||(52822-52871)


Alignment Details
Target: scaffold0257 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 317
Target Start/End: Original strand, 19054 - 19355
Alignment:
Q  19 agccatcacttctcctcctattgc---cataacaaagcctcttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgat 115  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19054 agccatcacttctcctcctattgctgccataacaaagcctcttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgat 19153  T
Q  116 caaggtgaagactctttggatcaatattattttcttaagttacttcattgctcttttcattttgaaatttaactctcttctctcacaccttttgttcagt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||  | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19154 caaggtgaagactctttggatcaatattattttcttaagttacctcatcacccttttcattttgaaatttaactctcttctctcacaccttttgttcagt 19253  T
Q  216 ttctctaaatgacgacgttgtcataaaaataacatctattattgaggaaccattttctaaggatgttgaatttaaagttccaaaatctaagctctcccct 315  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  19254 ttctctaaatgacgacgttgtcataaaaataacctctattattgaggaaccatcttctaaggatgttgaatttaaagttccaaaatctaagctctctcct 19353  T
Q  316 at 317  Q
    ||    
T  19354 at 19355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 163; Significance: 5e-87; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 27 - 313
Target Start/End: Original strand, 28185907 - 28186193
Alignment:
Q  27 cttctcctcctattgccataacaaagcctcttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaaga 126  Q
    |||||||||| ||| |||| |||| || | || ||||||||||  || |||||||||||||||||||||||||||||| |  ||||||||||||||||||    
T  28185907 cttctcctccaatttccatgacaaggcatttttccactcaagacattcatgttaataacttgcaggaaactagtaacactgatgatgatcaaggtgaaga 28186006  T
Q  127 ctctttggatcaatattattttcttaagttacttcattgctcttttcattttgaaatttaactctcttctctcacaccttttgttcagtttctctaaatg 226  Q
    |||||||||||||| ||||||||||||||||  ||||  | |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  28186007 ctctttggatcaattttattttcttaagttatctcatcacccttttcattttgaagtttaaatctcttctctcacaccttttgttcagtttctctaaatg 28186106  T
Q  227 acgacgttgtcataaaaataacatctattattgaggaaccattttctaaggatgttgaatttaaagttccaaaatctaagctctccc 313  Q
    | || | ||| |||||| |||| || ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  28186107 atgatgctgttataaaagtaacctcaattgttgaggaaccattttctaaggatgttgaatttaaagttccagaatctaagctatccc 28186193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 33 - 295
Target Start/End: Original strand, 28149961 - 28150223
Alignment:
Q  33 ctcctattgccataacaaagcctcttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaagactcttt 132  Q
    |||| ||| ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||| || |||||||||||||||||| ||||     
T  28149961 ctccaatttccataacaaggcctcttaccactcaagaagttcatgttaataacttgcaggaaactagtaacactaatgatgatcaaggtgaagagtctta 28150060  T
Q  133 ggatcaatattattttcttaagttacttcattgctcttttcattttgaaatttaactctcttctctcacaccttttgttcagtttctctaaatgacgacg 232  Q
    |||||||| ||||||||||||||||  ||||  | |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| || |    
T  28150061 ggatcaattttattttcttaagttatctcatcacccttttcattttgaagtttaaatctcttctctcacaccttttgttcagtttctctaaatgaggatg 28150160  T
Q  233 ttgtcataaaaataacatctattattgaggaaccattttctaaggatgttgaatttaaagttc 295  Q
     |||| ||||| |||| || ||| ||||||||| |||||||||||||||||||||| ||||||    
T  28150161 ctgtcgtaaaagtaacctcaattgttgaggaacaattttctaaggatgttgaatttgaagttc 28150223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 27 - 295
Target Start/End: Original strand, 28161864 - 28162132
Alignment:
Q  27 cttctcctcctattgccataacaaagcctcttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaaga 126  Q
    |||||||||| ||| |||| |||| || | || |||||| ||| ||| |||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  28161864 cttctcctccaatttccatgacaaggcattttgccactccagacgttcatgttaataacttgcaggaaactagtaacactaatgatgatcaaggtgaaga 28161963  T
Q  127 ctctttggatcaatattattttcttaagttacttcattgctcttttcattttgaaatttaactctcttctctcacaccttttgttcagtttctctaaatg 226  Q
    |||||||||||||| ||||||||||||||||  ||||  | |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  28161964 ctctttggatcaattttattttcttaagttatctcatcacccttttcattttgaagtttaaatctcttctctcacaccttttgttcagtttctctaaatg 28162063  T
Q  227 acgacgttgtcataaaaataacatctattattgaggaaccattttctaaggatgttgaatttaaagttc 295  Q
    |||| |  ||||||||| |||| || ||| ||||||||| || |||||||||||| |||||| ||||||    
T  28162064 acgatgccgtcataaaagtaacctcaattgttgaggaacgatattctaaggatgtcgaatttgaagttc 28162132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 100 - 307
Target Start/End: Complemental strand, 28479944 - 28479737
Alignment:
Q  100 taacattattgatgatcaaggtgaagactctttggatcaatattattttcttaagttacttcattgctcttttcattttgaaatttaactctcttctctc 199  Q
    |||||| | |||||||||||||||||||||||||||||||| |||||||||||| |||| ||||  | |||| ||||||||| ||||| |||||||||||    
T  28479944 taacatcaatgatgatcaaggtgaagactctttggatcaattttattttcttaatttacctcatcaccctttgcattttgaagtttaattctcttctctc 28479845  T
Q  200 acaccttttgttcagtttctctaaatgacgacgttgtcataaaaataacatctattattgaggaaccattttctaaggatgttgaatttaaagttccaaa 299  Q
    |||||||||| ||||||||| ||||||| ||   |||||||||| |||| || ||| ||||||||| ||| ||||||||||||||||||||||| ||| |    
T  28479844 acaccttttgctcagtttctgtaaatgatgattctgtcataaaagtaacctcaattgttgaggaacaattatctaaggatgttgaatttaaagtgccaga 28479745  T
Q  300 atctaagc 307  Q
    ||||||||    
T  28479744 atctaagc 28479737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 100 - 305
Target Start/End: Complemental strand, 28509127 - 28508922
Alignment:
Q  100 taacattattgatgatcaaggtgaagactctttggatcaatattattttcttaagttacttcattgctcttttcattttgaaatttaactctcttctctc 199  Q
    |||||| | |||||||||||||||||||||||||||||||| |||||||||||| |||| ||||  | |||| ||||||||| ||||| |||||||||||    
T  28509127 taacatcaatgatgatcaaggtgaagactctttggatcaattttattttcttaatttacctcatcaccctttgcattttgaagtttaattctcttctctc 28509028  T
Q  200 acaccttttgttcagtttctctaaatgacgacgttgtcataaaaataacatctattattgaggaaccattttctaaggatgttgaatttaaagttccaaa 299  Q
    |||||||||| ||||||||| ||||||| ||   |||||||||| |||| || ||| ||||||||| | | ||||||||||||||||||||||||||| |    
T  28509027 acaccttttgctcagtttctgtaaatgatgattctgtcataaaagtaacctcaattgttgaggaacaactatctaaggatgttgaatttaaagttccaga 28508928  T
Q  300 atctaa 305  Q
    ||||||    
T  28508927 atctaa 28508922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 33 - 227
Target Start/End: Original strand, 28151644 - 28151837
Alignment:
Q  33 ctcctattgccataacaaagcctcttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaagactcttt 132  Q
    |||| |||| ||||||||||||| | ||||||||||||||||||||| | | || ||||||||||||||||| || |||||||||||||||||| |||||    
T  28151644 ctccaattgacataacaaagcctgtaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgatgatcaaggtgaagaatcttt 28151743  T
Q  133 ggatcaatattattttcttaagttacttcattgctcttttcattttgaaatttaactctcttctctcacaccttttgttcagtttctctaaatga 227  Q
    |||||  | ||||||||||||||||| |||| || ||||| |||||||| |||| ||||||| | || || |||||| |||||||||||||||||    
T  28151744 ggatcgcttttattttcttaagttacctcatcgccctttttattttgaagtttagctctcttgtttcccatcttttg-tcagtttctctaaatga 28151837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 27 - 280
Target Start/End: Original strand, 28037427 - 28037680
Alignment:
Q  27 cttctcctcctattgccataacaaagcctcttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaaga 126  Q
    |||||||| | ||| |||||||||||||| |||||||| ||||||||||| | || |||| ||  ||||||||||||| || ||||| ||||||| ||||    
T  28037427 cttctccttcaattaccataacaaagcctgttaccactgaagatgttgatctcaaaaactggcgcgaaactagtaacactaatgatggtcaaggtaaaga 28037526  T
Q  127 ctctttggatcaatattattttcttaagttacttcattgctcttttcattttgaaatttaactctcttctctcacaccttttgttcagtttctctaaatg 226  Q
    |||||||||||| | ||||||||| ||||||| ||||  | |||||||||||||| |||||||| ||||| |  |||||| |||||||||| || |||||    
T  28037527 ctctttggatcagtgttattttctaaagttacctcatcacccttttcattttgaagtttaactcgcttcttttccaccttctgttcagtttatccaaatg 28037626  T
Q  227 acgacgttgtcataaaaataacatctattattgaggaaccattttctaaggatg 280  Q
    | ||   |||||| ||| |||  || | ||||||||| |  |||||||||||||    
T  28037627 atgataatgtcatgaaagtaagttcaaatattgaggatcagttttctaaggatg 28037680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 60 - 227
Target Start/End: Complemental strand, 17744615 - 17744448
Alignment:
Q  60 ccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaagactctttggatcaatattattttcttaagttact 159  Q
    |||||||||||||||||||| | | || |||||||||||| || | || |||||| |||||| || | |||||||||| || |||||||||||||||||     
T  17744615 ccactcaagatgttgatgttgaaatctggcaggaaactagaaagactaatgatgaccaaggtaaaaaatctttggatcgattttattttcttaagttacc 17744516  T
Q  160 tcattgctcttttcattttgaaatttaactctcttctctcacaccttttgttcagtttctctaaatga 227  Q
    |||| ||||||||||||||||| || ||||||||||| || |||| ||||| ||||||||||||||||    
T  17744515 tcatcgctcttttcattttgaagttgaactctcttctttctcaccctttgtccagtttctctaaatga 17744448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 60 - 227
Target Start/End: Complemental strand, 19045935 - 19045768
Alignment:
Q  60 ccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaagactctttggatcaatattattttcttaagttact 159  Q
    |||||||||||||||||||| | | || |||||||||||| || | || |||||| |||||| || | |||||||||| || |||||||||||||||||     
T  19045935 ccactcaagatgttgatgttgaaatctggcaggaaactagaaagactaatgatgaccaaggtaaaaaatctttggatcgattttattttcttaagttacc 19045836  T
Q  160 tcattgctcttttcattttgaaatttaactctcttctctcacaccttttgttcagtttctctaaatga 227  Q
    |||| ||||||||||||||||| || ||||||||||| || |||| ||||| ||||||||||||||||    
T  19045835 tcatcgctcttttcattttgaagttgaactctcttctttctcaccctttgtccagtttctctaaatga 19045768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 40 - 316
Target Start/End: Complemental strand, 27458982 - 27458710
Alignment:
Q  40 tgccataacaaagcctcttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaagactctttggatcaa 139  Q
    |||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| || | ||  ||||||||||||||||||||||||||||||    
T  27458982 tgccataacaaagcctcttaccactcaagatgttgatgttaaaatctggcaggaaactagcaagactaaggatgatcaaggtgaagactctttggatcaa 27458883  T
Q  140 tattattttcttaagttacttcattgctcttttcattttgaaatttaactctcttctctcacaccttttgttcagtttctctaaatgacgacgttgtcat 239  Q
    | | || ||    |||||  | ||  | |||||||||||||| |||||| ||||||| |   || ||||||||||||||||||||||| || | ||||||    
T  27458882 tctgatatt----agttatcttatcacccttttcattttgaagtttaaccctcttctttgcaactttttgttcagtttctctaaatgatgatgctgtcat 27458787  T
Q  240 aaaaataacatctattattgaggaaccattttctaaggatgttgaatttaaagttccaaaatctaagctctccccta 316  Q
    |||| |||  || | ||||||| | |  ||| |||| |||| |||||||| |||| || || |||||| ||| ||||    
T  27458786 aaaagtaagctcaaatattgagaatcagtttcctaacgatgatgaatttagagtttcagaacctaagccctctccta 27458710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 11420976 - 11421175
Alignment:
Q  27 cttctcctcctattgccataacaaagcctcttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaaga 126  Q
    |||||||||  ||||||||||||||||||  ||||| |||||||||||||||||| | ||  ||||||||||||||   || ||||||||||||||| ||    
T  11420976 cttctcctcaaattgccataacaaagcctgctaccattcaagatgttgatgttaaaatctgtcaggaaactagtaaggctaatgatgatcaaggtgatga 11421075  T
Q  127 ctctttggatcaatattattttcttaagttacttcattgctcttttcattttgaaatttaactctcttctctcacaccttttgttcagtttctctaaatg 226  Q
    |||||||||||| | |||||||||||||||||  |||  | |||||||||| ||| || ||||||||||| || |||  |||| |||||| |||||||||    
T  11421076 ctctttggatcagttttattttcttaagttacgacatcacccttttcatttagaagttgaactctcttctttcccactgtttg-tcagttgctctaaatg 11421174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 27776510 - 27776634
Alignment:
Q  27 cttctcctcctattgccataacaaagcctcttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaaga 126  Q
    |||||| ||| ||| ||||||||||||||| ||| |||||||||||||||||| | |||||||||||||||||||| | || |||| ||||||||||| |    
T  27776510 cttctcttccaatttccataacaaagcctcctactactcaagatgttgatgttgaaaacttgcaggaaactagtaagactaatgatcatcaaggtgaaaa 27776609  T
Q  127 ctctttggatcaatattattttctt 151  Q
    |||||||||||||| ||||||||||    
T  27776610 ctctttggatcaattttattttctt 27776634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 227
Target Start/End: Original strand, 27920260 - 27920432
Alignment:
Q  57 ttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaagactctttggatcaatattattttcttaag-- 154  Q
    ||||||||||| ||||||||| ||| | || ||||||||||||||||| || |||||||||||||||| ||||||||||| | | || ||||| ||||      
T  27920260 ttaccactcaatatgttgatgataaaatctggcaggaaactagtaacactaatgatgatcaaggtgaaaactctttggattagtgttgttttcataagca 27920359  T
Q  155 -ttacttcattgctcttttcattttgaaatttaactctcttctctcacaccttttgttcagtttctctaaatga 227  Q
     |||| ||||  | |||||||||||||| |||||||||||||| || |||||||||  ||||||||||||||||    
T  27920360 attacctcatcac-cttttcattttgaagtttaactctcttctttcccaccttttggacagtttctctaaatga 27920432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 57 - 196
Target Start/End: Original strand, 27954345 - 27954483
Alignment:
Q  57 ttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaagactctttggatcaatattattttcttaagtt 156  Q
    ||||||||||| ||||||||| ||| | || ||||||||||||||||| || |||||||||||||||| ||||||||||| | | || ||||| ||||||    
T  27954345 ttaccactcaatatgttgatgataaaatctggcaggaaactagtaacactaatgatgatcaaggtgaaaactctttggattagtgttgttttcataagtt 27954444  T
Q  157 acttcattgctcttttcattttgaaatttaactctcttct 196  Q
    || ||||  | |||||||||||||| ||||||||||||||    
T  27954445 acctcatcac-cttttcattttgaagtttaactctcttct 27954483  T

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Target: chr3; HSP #15
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 100 - 304
Target Start/End: Original strand, 28136378 - 28136577
Alignment:
Q  100 taacattattgatgatcaaggtga---agactctttggatcaatattattttcttaagttacttcattgctc----ttttcattttgaaatttaactctc 192  Q
    |||||| | |||||||||||||||   ||||||||| |||||||  ||||||||| |||||| ||||  |||    ||||||||||||| ||||||||||    
T  28136378 taacatcaatgatgatcaaggtgatgaagactctttagatcaattatattttctttagttacctcatcactcacccttttcattttgaactttaactctc 28136477  T
Q  193 ttctctcacaccttttgttcagtttctctaaatgacgacgttgtcataaaaataacatctattattgaggaaccattttctaaggatgttgaatttaaag 292  Q
    |||||||||||| |||||||||||||| ||||||| || | |||||||||| |||            |||||| ||| ||||||||||||||||||||||    
T  28136478 ttctctcacaccatttgttcagtttctgtaaatgatgatgctgtcataaaagtaa------------aggaacaattatctaaggatgttgaatttaaag 28136565  T

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Target: chr3; HSP #16
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 28056536 - 28056620
Alignment:
Q  31 tcctcctattgccataacaaagcctcttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgat 115  Q
    |||||| ||| ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||    
T  28056536 tcctccaatttccataacaaggcctcttaccactcaagaagttcatgttaataacttgcaggaaactagtaacactattgatgat 28056620  T

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Target: chr3; HSP #17
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 28066961 - 28067045
Alignment:
Q  31 tcctcctattgccataacaaagcctcttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgat 115  Q
    |||||| ||| ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||    
T  28066961 tcctccaatttccataacaaggcctcttaccactcaagaagttcatgttaataacttgcaggaaactagtaacactattgatgat 28067045  T

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Target: chr3; HSP #18
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 57 - 227
Target Start/End: Complemental strand, 8539383 - 8539210
Alignment:
Q  57 ttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaagactctttggatcaatattattttcttaagtt 156  Q
    |||||||||||||||||||||||||    | ||||||||||||||||| || |  | ||||||||||||| || |||||||| | |||||||||||||||    
T  8539383 ttaccactcaagatgttgatgttaaactttggcaggaaactagtaacactaatattaatcaaggtgaagaatccttggatcagttttattttcttaagtt 8539284  T
Q  157 acttcattgctcttttcattt---tgaaatttaactctcttctctcacaccttttgttcagtttctctaaatga 227  Q
    || |  |  | ||||||||||   |||| || ||||||||||| || |||| ||||||||| || |||||||||    
T  8539283 accttgtcacccttttcattttcatgaagttgaactctcttctttcccaccctttgttcagcttttctaaatga 8539210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 317
Target Start/End: Original strand, 28056627 - 28056706
Alignment:
Q  238 ataaaaataacatctattattgaggaaccattttctaaggatgttgaatttaaagttccaaaatctaagctctcccctat 317  Q
    |||||| |||| || ||| ||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||| |||||    
T  28056627 ataaaagtaacctcaattgttgaggaacaattttctaaggatgttgaatttagagttccagaatctaagctctctcctat 28056706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 317
Target Start/End: Original strand, 28067052 - 28067131
Alignment:
Q  238 ataaaaataacatctattattgaggaaccattttctaaggatgttgaatttaaagttccaaaatctaagctctcccctat 317  Q
    |||||| |||| || ||| ||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||| |||||    
T  28067052 ataaaagtaacctcaattgttgaggaacaattttctaaggatgttgaatttagagttccagaatctaagctctctcctat 28067131  T

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Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 28479996 - 28479947
Alignment:
Q  27 cttctcctcctattgccataacaaagcctcttaccactcaagatgttgat 76  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  28479996 cttctcctcctattgccataacaaatcctcttaccactcaggatgttgat 28479947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 28509179 - 28509130
Alignment:
Q  27 cttctcctcctattgccataacaaagcctcttaccactcaagatgttgat 76  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  28509179 cttctcctcctattgccataacaaatcctcttaccactcaggatgttgat 28509130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 27349214 - 27349263
Alignment:
Q  114 atcaaggtgaagactctttggatcaatattattttcttaagttacttcat 163  Q
    ||||||||||||||| ||||||||||| ||||||||||| ||||| ||||    
T  27349214 atcaaggtgaagactttttggatcaattttattttcttatgttacctcat 27349263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 27378552 - 27378601
Alignment:
Q  114 atcaaggtgaagactctttggatcaatattattttcttaagttacttcat 163  Q
    ||||||||||||||| ||||||||||| ||||||||||| ||||| ||||    
T  27378552 atcaaggtgaagactttttggatcaattttattttcttatgttacctcat 27378601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 26629631 - 26629677
Alignment:
Q  111 atgatcaaggtgaagactctttggatcaatattattttcttaagtta 157  Q
    ||||| |||||||||||| ||||||||||| ||||||||||| ||||    
T  26629631 atgatgaaggtgaagactttttggatcaattttattttcttatgtta 26629677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 41 - 261
Target Start/End: Original strand, 8020834 - 8021052
Alignment:
Q  41 gccataacaaagcctcttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaagactctttggatcaat 140  Q
    ||||||||||||||||| ||||||||||||||||||||| | | || ||||||||||||||||| || ||| |||| ||||||||| ||||||||||  |    
T  8020834 gccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggt 8020933  T
Q  141 attattttcttaagttacttcattgctcttttcattttgaaatttaactctcttctctcacaccttttgttcagtttctctaaatgacgacgttgtcata 240  Q
     || |||||||||||||  |||| || |||||||||||| || |||||  |||||| || ||||||||  ||||||||||||||||| |||| ||||||     
T  8020934 tttcttttcttaagttatctcatcgcccttttcattttg-aagttaaccttcttctttcccacctttt-ctcagtttctctaaatgatgacgatgtcatg 8021031  T
Q  241 aaaataacatctattattgag 261  Q
    ||| ||| ||| | |||||||    
T  8021032 aaagtaagatcaaatattgag 8021052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 22393525 - 22393574
Alignment:
Q  114 atcaaggtgaagactctttggatcaatattattttcttaagttacttcat 163  Q
    ||||||||||||||| ||||||||||| ||||||||||| ||||| ||||    
T  22393525 atcaaggtgaagactttttggatcaattttattttcttatgttacctcat 22393574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 52871 - 52822
Alignment:
Q  114 atcaaggtgaagactctttggatcaatattattttcttaagttacttcat 163  Q
    ||||||||||||||| ||||||||||| ||||||||||| ||||| ||||    
T  52871 atcaaggtgaagactttttggatcaattttattttcttatgttacctcat 52822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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