View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_high_59 (Length: 324)
Name: NF20479_high_59
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_high_59 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 21 - 308
Target Start/End: Complemental strand, 50663592 - 50663303
Alignment:
| Q |
21 |
atccgaaattggataatagggaaaaataaaaggagttgcttgaacatttgaaaaatctatgatctccctaaacaaacactcgaaggtggtaggttgagaa |
120 |
Q |
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| T |
50663592 |
atccgaaagtggataatagggaaaaacaaaaggagttgcttgaacatttgaaaaatctatgatctccctgaacaaacactcgaaggtggtaggttgagaa |
50663493 |
T |
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| Q |
121 |
acttttacaattctgtataagttgattgcacaaaagttaatgttcatccttattatgtcattgttctagtatacagtgtatgtttgaaataaataatgtc |
220 |
Q |
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| T |
50663492 |
acttttacaattctgtataagttgattgcacaaaagttaatgtttatccttattatgtcattgttctagtatacagtgtatgtttgaaataaataatgtc |
50663393 |
T |
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| Q |
221 |
attatgatgattggccaattttaagtcat--tgtataaccttgattctttaaacttcctttgatttacatagttgttttcttcccttctt |
308 |
Q |
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| T |
50663392 |
attatgatgattggccaattttaagtcattgtgtataaccttgattctttaaacttcctttgatttacatagttgttttcttcccttctt |
50663303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 50653901 - 50653831
Alignment:
| Q |
174 |
tatgtcattgttctagtatacagtgtatgtttgaaataaataatgtcattatgatgattggccaattttaagtc |
247 |
Q |
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| T |
50653901 |
tatgtcattgttctagtatacattgtgtgtttgaaataaata---tcattatgatgatgggccacttttaagtc |
50653831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 50654052 - 50654001
Alignment:
| Q |
94 |
aaacactcgaaggtggtaggttgagaaacttttacaattctgtataagttga |
145 |
Q |
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| T |
50654052 |
aaacactttaaggtggtaggttgagaaagttttacaattccgtagaagttga |
50654001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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