View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_high_72 (Length: 283)
Name: NF20479_high_72
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_high_72 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 2484165 - 2484417
Alignment:
| Q |
1 |
tgatattattgatggggctgtcaaggaagatttggtaaatggtggtttgattaaggttggttattctggttgtactttgaattcggtttggttcatttgg |
100 |
Q |
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| T |
2484165 |
tgatattattgatggggctgtcaaggaagatttggtaaatggtggtttgattaaggttggttattctggttgtactttgaattcggtt------------ |
2484252 |
T |
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| Q |
101 |
tttggtatgttgacttctcactttgattgtctttctctctttggtttcttcctttctgtttgactgcatatctcccctttatgattgcacttcacttccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2484253 |
--tggtatgttgacttctcactttgattgtctttctctctttggtttcttcctttctgtttgactgcacatctcccctttatgattgcacttcacttccc |
2484350 |
T |
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| Q |
201 |
tctatttgattcgttctctcttttgatttgtttctttgtttaactagtttctccttcattagttttt |
267 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| | |||||||| |||||||||||| |
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| T |
2484351 |
tctatttgattcgttctctcttttgatttgtttgtttgtttaattggtttctccctcattagttttt |
2484417 |
T |
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