View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_high_79 (Length: 258)
Name: NF20479_high_79
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_high_79 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 43095365 - 43095607
Alignment:
| Q |
1 |
caatacccttaaacctcaaagaacaatcgtgtgacatactgacattcggcaacacaaacaacctcaacagccacacaacctcaaaagctacaaagcaacg |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||| |||||| |
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| T |
43095365 |
caatacccttaaacctcgaagaacaatcgtgtgacatactgacattcggcgacacaaacaacctcaatagccacacaacctcaaaagccacaatgcaacg |
43095464 |
T |
|
| Q |
101 |
aatgtacattcgatgtttcttttctatcgaagttaaatctcgattctgattaacactaccagaagcaatgttgaagaaagttttcaaaacccctcgcttc |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43095465 |
aatgtacattcgttgtttcttttctatcgaatttaaatctcgattctgattaacactaccagaagcaatgttgaagaaagttttcaaaaccccttgcttc |
43095564 |
T |
|
| Q |
201 |
ttcgggttccgccgcaaccacaacaattctctcacaacctctt |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43095565 |
ttcgggttccgccgcaaccacaacaattctctcacaacctctt |
43095607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 120 - 243
Target Start/End: Original strand, 6778030 - 6778158
Alignment:
| Q |
120 |
ttttctatcgaagttaaatctcgattctgattaacactacc-----agaagcaatgttgaagaaagttttcaaaacccctcgcttcttcgggttccgccg |
214 |
Q |
| |
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||||| |||||| || |||||| |||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
6778030 |
ttttccatcgaatttgaatctccattctgattaacactacctagccagaagcaatgttgaagaaagctttcgaaacccctcgcttcttcgggttccgccg |
6778129 |
T |
|
| Q |
215 |
caaccacaacaattctctcacaacctctt |
243 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
6778130 |
caaccacaacaattctctcacaacctctt |
6778158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 120 - 243
Target Start/End: Complemental strand, 17489048 - 17488920
Alignment:
| Q |
120 |
ttttctatcgaagttaaatctcgattctgattaacactacc-----agaagcaatgttgaagaaagttttcaaaacccctcgcttcttcgggttccgccg |
214 |
Q |
| |
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||||| |||||| || ||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| |||||||||||||| |
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| T |
17489048 |
ttttccatcgaatttgaatctcgattctgattaacactacctaaccagaagcaatgttgaagaaagctttcggaacccctcgctttttcgggttccgccg |
17488949 |
T |
|
| Q |
215 |
caaccacaacaattctctcacaacctctt |
243 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
17488948 |
caaccacaacaattctctcacaacctctt |
17488920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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