View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_high_86 (Length: 250)
Name: NF20479_high_86
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_high_86 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 6971994 - 6971751
Alignment:
| Q |
11 |
cataggttcatgttcaactataagaacgcaacggtgttaaatcttataagggatacttttgtcatttaatgtaatcctactcaaattgagagatcaatat |
110 |
Q |
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| T |
6971994 |
cataggttcatgttcaactataagaacgcaacggtgttaaatcttataagggatacttttgtcatttattgtagtcctactcaaatcgaaagatcaatat |
6971895 |
T |
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| Q |
111 |
atgcaattg---tgtacaaagaatatttgtagtcctactcaaatcgagagattaatatatgcaattctgtacaaataatatccgattcacaaaacaaatt |
207 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| ||||| |||||||||||||||||| |
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| T |
6971894 |
atgcaattgtgttgtacaaagaatatttgtagtcctactcaaatcgagagatcaatatatacaattgtgtacaaagaatattcgattcacaaaacaaatt |
6971795 |
T |
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| Q |
208 |
aaaactac-aaattcaatcgactaatttatttattattatagtc |
250 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6971794 |
aaaactacaaaattcaatcgactaatttatttattattatagtc |
6971751 |
T |
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