View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_high_88 (Length: 249)
Name: NF20479_high_88
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_high_88 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 230
Target Start/End: Complemental strand, 46226005 - 46225789
Alignment:
| Q |
13 |
agcagagaccataaatcgtgaatttgatagttttctaaaggtaatatgttagggaannnnnnnactagctcatacaataggaaagaaagcattattaaca |
112 |
Q |
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| T |
46226005 |
agcagagaccataaatcgtgaatttgatagttttctaaaggtaatatgttagggaatttttt-actagctcatacaataggaaagaaagcattattaaca |
46225907 |
T |
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| Q |
113 |
tgagcatgttcgtaggcttttgataattaagctggaagattgcagtagttccatgtagtctccacttatcttcttgggattttcttaacctgttacaaca |
212 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46225906 |
tgagcatgttcgtaggcttttgataattaaactggaagattgcagtagttccatgtagtctccacttatcttcttgggattttcttaacctgttacaaca |
46225807 |
T |
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| Q |
213 |
attggtgtggattatcag |
230 |
Q |
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|||||||||||||||||| |
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| T |
46225806 |
attggtgtggattatcag |
46225789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 230
Target Start/End: Original strand, 24167444 - 24167549
Alignment:
| Q |
124 |
gtaggcttttgataattaagctggaagattgcagtagttccatgtagtctccacttatcttcttggga-ttttcttaacctgttacaacaattggtgtgg |
222 |
Q |
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| T |
24167444 |
gtaggcttttgataattaaactggaagattgcagtagcttcttgtagact--acttatcttcttaggatttttttttacttgttacaacaattggtgtgg |
24167541 |
T |
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| Q |
223 |
attatcag |
230 |
Q |
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|||||||| |
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| T |
24167542 |
attatcag |
24167549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 27756402 - 27756468
Alignment:
| Q |
76 |
actagctcatacaataggaaagaaagcattattaacatgagcatgttcgtaggcttttgataattaa |
142 |
Q |
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| T |
27756402 |
actagctcatacaataggcaaagaagcattattaacatgaacatgctgttaggcttttgaaaattaa |
27756468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 27756591 - 27756674
Alignment:
| Q |
145 |
tggaagattgcagtagttccatgtagtctccacttatcttcttgggattttcttaacctgttacaacaattggtgtggattatcag |
230 |
Q |
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||||||| |||| ||||| ||| ||||| ||||||||||||| ||||||| | || ||||||||||| |||||||||||||||| |
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| T |
27756591 |
tggaagactgcaatagtttcatctagtc--cacttatcttcttaggattttttcgacttgttacaacaactggtgtggattatcag |
27756674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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