View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_high_9 (Length: 586)
Name: NF20479_high_9
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_high_9 |
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| [»] scaffold1019 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 4 - 570
Target Start/End: Original strand, 10513586 - 10514152
Alignment:
| Q |
4 |
ggagcttccattgattgttgtggatgtattcattaacagtagatttgaggagaggcctagtagcttcgggaatgttgagaagatccgcaagagattggcc |
103 |
Q |
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| T |
10513586 |
ggagcttccattgattgttgtggatgtattcattaacaatagattttaggagaggtctagtagcttcgggaatgttgagaagattcgcaagagattggcc |
10513685 |
T |
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| Q |
104 |
aaaccaagggtcattccagaagctaatatccttaccatcgcctaacaaccaaatggagttagattgaatgcaagagtactcttcttttatactgctccaa |
203 |
Q |
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| T |
10513686 |
aaaccaagggtcattccagaagctaatatccttaccatcgcctaacaaccaaatggagttagattgaatgcaagagtactcttcttttatattgctccat |
10513785 |
T |
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| Q |
204 |
aaagaagagaagatgtgatgctttatagatttgttgtttctcaagactctatctttcaaaagagctgcacaaggtttctgagagttgatcaaattccagc |
303 |
Q |
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| T |
10513786 |
aaagaagagaagatgtgatgctttatagatttgttgtttctcaagactctatccttcaaaagagttgcccaaggtttctgagagttgatcaaattccagc |
10513885 |
T |
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| Q |
304 |
aaagcttcaagttggtagcttgattcaaacttatgaaggatcttaagtttaaaccaccctgcttccaatgtctacacaccttcttccaagagactgaaat |
403 |
Q |
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| T |
10513886 |
aaagcttcaagttggtagcttgattcaaacttatgagggatcttaagtttaaaccaccctgcttccaatgtctacacaccttcttccaagagactgaaat |
10513985 |
T |
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| Q |
404 |
taatttccttttgtctttgtctccactccaaataaaattcctaatctctttttcaagatctttgagaagagaaacaggccagacataaatagagatgcta |
503 |
Q |
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| T |
10513986 |
taatttccttttgtctttgtctccactctagatgaaattcctaatctctttttcaagatctttgagaagagaaataggccaggcataaatagagatacta |
10514085 |
T |
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| Q |
504 |
taggttagcatactatgaataacagattgcaccaactggactctacctgccatagataacaaacttg |
570 |
Q |
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| T |
10514086 |
taggttagcatactatgaataacaaattgcaccaactggactctacctgccatagataacaaacttg |
10514152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1019 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: scaffold1019
Description:
Target: scaffold1019; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 357 - 570
Target Start/End: Original strand, 1 - 214
Alignment:
| Q |
357 |
ccaccctgcttccaatgtctacacaccttcttccaagagactgaaattaatttccttttgtctttgtctccactccaaataaaattcctaatctcttttt |
456 |
Q |
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| T |
1 |
ccaccctgcttccaatgtctacacaccttcttccaagagactgaaattaatttccttttgtctttgtctctactccagatgaaattcctaatctctttct |
100 |
T |
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| Q |
457 |
caagatctttgagaagagaaacaggccagacataaatagagatgctataggttagcatactatgaataacagattgcaccaactggactctacctgccat |
556 |
Q |
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| T |
101 |
caagatctttgagaagagaaataggccaggcataaatagagatgctataggttaacatactatgaataacagattgcaccaactggactctacctgccat |
200 |
T |
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| Q |
557 |
agataacaaacttg |
570 |
Q |
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|||||||||||||| |
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| T |
201 |
agataacaaacttg |
214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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