View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20479_high_90 (Length: 245)
Name: NF20479_high_90
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_high_90 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 50894196 - 50894407
Alignment:
| Q |
1 |
taaaacaaacaataccatgaagaaatcacaaaaacatagnnnnnnntacgcgtaaatcttttatttaactaaaacaaagataacaacaattt-agggatg |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
50894196 |
taaaacaaacaataccatgaagaaatcacaaaaacatagaaaaaaatacgcgtaaatcttttatttaactaaaacaaagataacaacaattttagggatg |
50894295 |
T |
|
| Q |
100 |
tgatttcgaaacaaaattgacctaaacaattctcttagataggtcgaaaagaagtcgaaaatttaaaaagtggtgagtgaaaccaaataatccatcacta |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50894296 |
tgatttcgaaacaaaattgacctaaacaattctcttagataggtcgaaaagaagtcgaaaatttaaaaagtggtgagtgaaaccaaataatccatcacta |
50894395 |
T |
|
| Q |
200 |
ctttttgtaatt |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
50894396 |
ttttttgtaatt |
50894407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University