View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20479_high_92 (Length: 240)
Name: NF20479_high_92
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_high_92 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 32260026 - 32260250
Alignment:
| Q |
1 |
tgcactgaaaatggatctactaatgactataagagcagcaaaaagtactagcctacttggaatattacccctcatggcttcttttacggttttatcatta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32260026 |
tgcactgaaaatggatctactaatgactataagagcagcaaaaagtactagcctacttggaatattacccctcatggcttctttttcggttttatcatta |
32260125 |
T |
|
| Q |
101 |
cttctaaaagttttttatgtaccacacaaccctcatatcaaaatagaagcttcgcgtacagcattaagtgctacgatagcattcagtaatttccctgcag |
200 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32260126 |
ctcctgaaagttttttatgtaccacacaaccctcatatcaaaatagaagcttcgcgtacagcattaagtgctacgatagcattcagtaatttccctgcag |
32260225 |
T |
|
| Q |
201 |
tgtccgatgctttgatagaacttaa |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
32260226 |
tgtccgatgctttgatagaacttaa |
32260250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University