View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20479_high_93 (Length: 240)
Name: NF20479_high_93
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_high_93 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 34377469 - 34377699
Alignment:
| Q |
1 |
aagtcactactctttcccacaaccacttgtgtttccgggacggagggcgatggatgagtgttaccaatggaattgtttgtcaatggcgtggccataattt |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34377469 |
aagtcattactctttcccacaaccacttgtgtttccgggacggaggccgatgaatgagtgctaccaatggaattgtttgtcaatggtgtggccataattt |
34377568 |
T |
|
| Q |
101 |
gttcctaagataggtctattttgatcattaaccaacttagcggaatcccttggtgttctaacaatctcatctgtgacattttgtaaggcagaatggaacg |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34377569 |
gttcc-aagataggtctattttgatcattaaccaactcagcggaatcccttggtgttctaacaatctcatccgtgacattttgtaaggcagaatggaacg |
34377667 |
T |
|
| Q |
201 |
aatttccttgtgccaagtgctgctgtctgtgc |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
34377668 |
aatttccttgtgccaagtgctgctgtctgtgc |
34377699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 4 - 232
Target Start/End: Complemental strand, 35976136 - 35975909
Alignment:
| Q |
4 |
tcactactctttcccacaaccacttgtgtttccgggacggagggcgatggatgagtgttaccaatggaattgtttgtcaatggcgtggccataatttgtt |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35976136 |
tcactactctttcccacaaccacttgtgtttccgggacggagggcgatggatgggtgctaccaatggaattgtttgtcaatggcgtggccataatttgtt |
35976037 |
T |
|
| Q |
104 |
cctaagataggtctattttgatcattaaccaacttagcggaatcccttggtgttctaacaatctcatctgtgacattttgtaaggcagaatggaacgaat |
203 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
35976036 |
cc-aagataggtctattttgatcattaaccaacttagcggaatctcttggtgttctaacaatctcatctatgacattttgtaaggcagaatgatacgaat |
35975938 |
T |
|
| Q |
204 |
ttccttgtgccaagtgctgctgtctgtgc |
232 |
Q |
| |
|
|||||||||||||||||| |||||||||| |
|
|
| T |
35975937 |
ttccttgtgccaagtgcttctgtctgtgc |
35975909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 12879505 - 12879734
Alignment:
| Q |
1 |
aagtcactactctttcccacaaccacttgtgtttccgggacggagggcgatggatgagtgttaccaatggaattgtttgtcaatggcgtggccataattt |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12879505 |
aagtcactactctttcccataaccacttgtgttttcgggacaacgggcgatgaatgagtgttaccaatggaattgtttgtcaatgtcgtggccataattt |
12879604 |
T |
|
| Q |
101 |
gttcctaagataggtctattttgatcattaaccaacttagcggaatcccttggtgttctaacaatctcatctgtgacattttgtaaggcagaatggaacg |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| | |||||| || ||||||||||||||||||||| |||||||||||||||| |||| |||||| |
|
|
| T |
12879605 |
gttcc-aagataggtctattttgatcattaaccaactcaacggaattccatggtgttctaacaatctcatccgtgacattttgtaaggtagaaaggaacg |
12879703 |
T |
|
| Q |
201 |
aatttccttgtgccaagtgctgctgtctgtg |
231 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| |
|
|
| T |
12879704 |
aatttccttgttccaagtgttgctgtctgtg |
12879734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University