View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_high_98 (Length: 237)
Name: NF20479_high_98
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_high_98 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 31 - 223
Target Start/End: Original strand, 28416721 - 28416913
Alignment:
| Q |
31 |
ccaattcacaaggcatatatataaatcccaaacaaggtatgatttatttttgttcttctgagaaaattaactaaaaagaagcttggagagtctttgttct |
130 |
Q |
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| T |
28416721 |
ccaattcacaaggcatatatataaattccaaacaaggtatgatttgtttttgttcttctgagaaaattaactaaaaagaagcttggagagtctttgttct |
28416820 |
T |
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| Q |
131 |
tctgtttcttaactcacaacaaggtatgattcttcttctgtttttgttgttattctttctaagagaataatttcttgttgttatttctatttg |
223 |
Q |
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| T |
28416821 |
tctgtttcttaactcacaacaaggtatgattcttcttctgtttttgttgttattctttctaagagaataatttcttgttgttatttctatttg |
28416913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 28415115 - 28415150
Alignment:
| Q |
1 |
ttataaagttcaaagacaaactccaataacccaatt |
36 |
Q |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
28415115 |
ttataaagttcaaagacaaattccaataacccaatt |
28415150 |
T |
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