View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20479_low_100 (Length: 238)

Name: NF20479_low_100
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20479_low_100
NF20479_low_100
[»] chr4 (44 HSPs)
chr4 (18-130)||(22303146-22303258)
chr4 (43-129)||(4603280-4603366)
chr4 (44-129)||(39931493-39931578)
chr4 (40-129)||(42617175-42617264)
chr4 (40-128)||(19414168-19414256)
chr4 (55-129)||(15184598-15184672)
chr4 (40-129)||(9319100-9319189)
chr4 (42-129)||(47202877-47202964)
chr4 (40-125)||(19725349-19725435)
chr4 (190-238)||(22303038-22303086)
chr4 (38-129)||(8601253-8601344)
chr4 (47-110)||(23284743-23284806)
chr4 (42-129)||(46175926-46176013)
chr4 (43-124)||(2141698-2141779)
chr4 (40-129)||(12495589-12495678)
chr4 (39-128)||(2547991-2548080)
chr4 (40-125)||(3966785-3966870)
chr4 (36-129)||(10046284-10046377)
chr4 (40-129)||(17222881-17222970)
chr4 (40-129)||(29877691-29877780)
chr4 (40-128)||(825735-825823)
chr4 (57-129)||(23335694-23335766)
chr4 (42-125)||(9201706-9201789)
chr4 (42-129)||(46704217-46704304)
chr4 (43-129)||(897022-897108)
chr4 (40-119)||(19298077-19298157)
chr4 (40-130)||(36254981-36255071)
chr4 (40-129)||(15179869-15179958)
chr4 (40-129)||(18630840-18630929)
chr4 (40-129)||(22117405-22117494)
chr4 (40-129)||(36740956-36741045)
chr4 (40-129)||(38345767-38345856)
chr4 (36-125)||(48238077-48238166)
chr4 (40-129)||(48591369-48591458)
chr4 (30-78)||(24101875-24101923)
chr4 (40-119)||(9153527-9153606)
chr4 (43-129)||(22273832-22273918)
chr4 (50-128)||(55638036-55638114)
chr4 (40-129)||(488329-488418)
chr4 (40-129)||(4398151-4398240)
chr4 (61-130)||(26206320-26206389)
chr4 (40-129)||(41228955-41229044)
chr4 (61-109)||(11679093-11679141)
chr4 (61-109)||(11687372-11687420)
[»] chr6 (25 HSPs)
chr6 (40-129)||(32165206-32165295)
chr6 (40-124)||(1189440-1189524)
chr6 (40-111)||(22708356-22708427)
chr6 (40-129)||(1468227-1468315)
chr6 (40-129)||(10184275-10184364)
chr6 (40-125)||(29052389-29052473)
chr6 (40-128)||(4808624-4808712)
chr6 (40-119)||(34223469-34223549)
chr6 (40-119)||(9894837-9894916)
chr6 (42-129)||(32615362-32615449)
chr6 (43-129)||(21609997-21610083)
chr6 (42-126)||(32675836-32675920)
chr6 (40-127)||(9202344-9202431)
chr6 (40-129)||(10874036-10874125)
chr6 (40-108)||(6752885-6752953)
chr6 (55-111)||(10401763-10401819)
chr6 (43-111)||(17300702-17300770)
chr6 (55-129)||(8014840-8014914)
chr6 (43-129)||(17914997-17915083)
chr6 (44-126)||(23314763-23314845)
chr6 (44-126)||(23324930-23325012)
chr6 (42-119)||(2040128-2040205)
chr6 (88-129)||(13429507-13429548)
chr6 (191-219)||(1189396-1189424)
chr6 (43-75)||(15053651-15053683)
[»] chr7 (34 HSPs)
chr7 (42-129)||(14675907-14675994)
chr7 (40-129)||(991551-991640)
chr7 (40-129)||(16958867-16958956)
chr7 (40-127)||(1312167-1312254)
chr7 (40-129)||(16932875-16932964)
chr7 (40-129)||(16938258-16938347)
chr7 (40-129)||(23137108-23137197)
chr7 (40-125)||(22575642-22575727)
chr7 (40-129)||(19913997-19914086)
chr7 (43-129)||(44799454-44799540)
chr7 (40-129)||(22032814-22032903)
chr7 (42-129)||(47654361-47654448)
chr7 (44-129)||(35246723-35246806)
chr7 (40-129)||(28004635-28004724)
chr7 (43-130)||(7774695-7774781)
chr7 (42-129)||(20888626-20888713)
chr7 (39-125)||(43818822-43818909)
chr7 (43-129)||(48949772-48949864)
chr7 (55-111)||(24371382-24371438)
chr7 (41-109)||(25908366-25908434)
chr7 (49-128)||(32848583-32848662)
chr7 (36-129)||(12473405-12473498)
chr7 (40-129)||(29378697-29378786)
chr7 (43-78)||(1111352-1111387)
chr7 (47-129)||(43391773-43391855)
chr7 (68-129)||(16012750-16012811)
chr7 (40-105)||(29778453-29778518)
chr7 (40-109)||(33288020-33288089)
chr7 (40-129)||(46744005-46744094)
chr7 (190-222)||(24371502-24371534)
chr7 (43-111)||(25536332-25536400)
chr7 (190-222)||(35246630-35246662)
chr7 (190-222)||(43818959-43818991)
chr7 (55-107)||(48021608-48021660)
[»] chr3 (31 HSPs)
chr3 (40-129)||(29614245-29614334)
chr3 (40-129)||(3645354-3645443)
chr3 (37-125)||(1516040-1516128)
chr3 (43-129)||(20894554-20894640)
chr3 (46-119)||(29830590-29830663)
chr3 (46-129)||(37778185-37778268)
chr3 (40-129)||(40240522-40240611)
chr3 (43-119)||(42381208-42381284)
chr3 (43-119)||(42409922-42409998)
chr3 (40-129)||(4257243-4257336)
chr3 (42-129)||(42956126-42956213)
chr3 (36-86)||(12004387-12004437)
chr3 (40-126)||(17752076-17752162)
chr3 (40-126)||(19053396-19053482)
chr3 (55-129)||(53218000-53218074)
chr3 (49-128)||(7292733-7292809)
chr3 (39-129)||(28741154-28741248)
chr3 (39-111)||(25341340-25341412)
chr3 (55-119)||(29830718-29830782)
chr3 (43-87)||(42615039-42615083)
chr3 (39-130)||(37243517-37243608)
chr3 (42-128)||(2145609-2145695)
chr3 (39-129)||(38524140-38524230)
chr3 (39-128)||(53787696-53787785)
chr3 (36-108)||(10449050-10449122)
chr3 (49-129)||(20685837-20685917)
chr3 (30-78)||(27769752-27769800)
chr3 (61-109)||(28623222-28623270)
chr3 (40-128)||(30321675-30321762)
chr3 (45-109)||(35583670-35583734)
chr3 (42-110)||(47403709-47403777)
[»] chr1 (43 HSPs)
chr1 (40-129)||(17628370-17628459)
chr1 (30-125)||(15631960-15632055)
chr1 (40-125)||(42591438-42591523)
chr1 (40-129)||(15791435-15791524)
chr1 (40-129)||(32497217-32497306)
chr1 (40-127)||(15235106-15235193)
chr1 (30-129)||(35275833-35275932)
chr1 (42-129)||(3116009-3116096)
chr1 (39-129)||(25485800-25485890)
chr1 (40-109)||(19395846-19395915)
chr1 (42-129)||(5243351-5243438)
chr1 (43-110)||(8061957-8062024)
chr1 (30-129)||(36259226-36259325)
chr1 (60-130)||(14461006-14461076)
chr1 (43-129)||(16888914-16889000)
chr1 (40-117)||(17348942-17349019)
chr1 (40-111)||(8410203-8410274)
chr1 (42-129)||(37329359-37329446)
chr1 (43-129)||(19220225-19220311)
chr1 (40-119)||(22088354-22088429)
chr1 (40-102)||(35897564-35897626)
chr1 (40-129)||(3069799-3069888)
chr1 (40-129)||(17814242-17814331)
chr1 (55-119)||(19284960-19285024)
chr1 (43-129)||(26988200-26988286)
chr1 (40-129)||(5347206-5347295)
chr1 (40-129)||(13412399-13412487)
chr1 (40-129)||(15515292-15515381)
chr1 (40-129)||(28690056-28690145)
chr1 (40-129)||(41196655-41196744)
chr1 (40-129)||(48819351-48819440)
chr1 (42-129)||(46500947-46501035)
chr1 (48-100)||(49822817-49822869)
chr1 (43-126)||(16708854-16708937)
chr1 (67-129)||(31378723-31378785)
chr1 (40-129)||(4068167-4068256)
chr1 (40-129)||(6337701-6337790)
chr1 (40-129)||(9572729-9572818)
chr1 (36-129)||(12256659-12256751)
chr1 (40-129)||(35282539-35282628)
chr1 (40-129)||(47413424-47413513)
chr1 (55-111)||(12871435-12871491)
chr1 (97-129)||(26435177-26435209)
[»] chr8 (30 HSPs)
chr8 (40-129)||(12607131-12607220)
chr8 (40-129)||(42102158-42102247)
chr8 (40-120)||(29218196-29218276)
chr8 (42-129)||(11988248-11988335)
chr8 (40-129)||(42363262-42363351)
chr8 (40-129)||(37410858-37410947)
chr8 (40-129)||(38338796-38338885)
chr8 (40-125)||(19925613-19925698)
chr8 (40-129)||(38195538-38195627)
chr8 (43-129)||(32751189-32751276)
chr8 (43-129)||(218202-218287)
chr8 (43-129)||(694762-694847)
chr8 (43-129)||(698971-699056)
chr8 (43-129)||(731825-731910)
chr8 (43-129)||(855721-855806)
chr8 (40-119)||(35055484-35055562)
chr8 (39-129)||(24866895-24866985)
chr8 (39-129)||(31079110-31079200)
chr8 (40-109)||(25333646-25333715)
chr8 (49-129)||(38895711-38895791)
chr8 (40-128)||(42667050-42667138)
chr8 (40-109)||(25671835-25671902)
chr8 (40-128)||(24087223-24087312)
chr8 (36-119)||(16926669-16926752)
chr8 (94-129)||(35168440-35168475)
chr8 (40-78)||(3664238-3664276)
chr8 (41-119)||(31459109-31459187)
chr8 (40-129)||(16972301-16972390)
chr8 (49-129)||(32924167-32924246)
chr8 (190-222)||(38338946-38338978)
[»] chr2 (32 HSPs)
chr2 (40-129)||(32521991-32522080)
chr2 (36-119)||(40301421-40301503)
chr2 (42-129)||(19683625-19683711)
chr2 (40-129)||(22422114-22422203)
chr2 (40-129)||(22898302-22898391)
chr2 (40-129)||(23956209-23956298)
chr2 (40-129)||(32366201-32366290)
chr2 (30-129)||(5516127-5516227)
chr2 (43-110)||(446498-446565)
chr2 (55-129)||(17532000-17532075)
chr2 (43-110)||(30382217-30382284)
chr2 (40-111)||(2757031-2757102)
chr2 (40-126)||(736019-736105)
chr2 (83-129)||(12223904-12223950)
chr2 (42-128)||(21788510-21788596)
chr2 (40-129)||(4026977-4027066)
chr2 (40-129)||(8832509-8832598)
chr2 (49-129)||(10574115-10574196)
chr2 (42-78)||(26440196-26440232)
chr2 (49-129)||(38471745-38471825)
chr2 (42-129)||(25836660-25836746)
chr2 (43-129)||(2401570-2401656)
chr2 (63-129)||(12267049-12267115)
chr2 (43-129)||(17546476-17546562)
chr2 (40-129)||(887464-887553)
chr2 (191-220)||(22422265-22422294)
chr2 (40-129)||(33321257-33321346)
chr2 (40-129)||(36501460-36501549)
chr2 (39-127)||(15155867-15155955)
chr2 (190-222)||(22898452-22898484)
chr2 (49-129)||(29774797-29774877)
chr2 (35-119)||(31165092-31165175)
[»] scaffold0048 (1 HSPs)
scaffold0048 (40-121)||(59327-59408)
[»] chr5 (34 HSPs)
chr5 (40-129)||(15709837-15709926)
chr5 (36-129)||(41419553-41419646)
chr5 (42-125)||(26003053-26003136)
chr5 (43-129)||(29418700-29418786)
chr5 (40-129)||(4728897-4728985)
chr5 (40-129)||(16722078-16722167)
chr5 (40-125)||(38461225-38461312)
chr5 (39-129)||(29659112-29659202)
chr5 (40-129)||(28357193-28357282)
chr5 (37-129)||(28357404-28357496)
chr5 (42-128)||(33757140-33757226)
chr5 (42-129)||(28625532-28625619)
chr5 (36-111)||(43268577-43268652)
chr5 (40-126)||(2878622-2878707)
chr5 (47-129)||(5203386-5203468)
chr5 (55-129)||(43319055-43319129)
chr5 (40-129)||(780513-780602)
chr5 (49-126)||(11991360-11991436)
chr5 (40-129)||(27805967-27806056)
chr5 (58-110)||(6008203-6008255)
chr5 (94-129)||(15122596-15122631)
chr5 (41-111)||(1943065-1943135)
chr5 (40-129)||(5559864-5559956)
chr5 (43-129)||(9477388-9477474)
chr5 (40-129)||(13625465-13625555)
chr5 (40-129)||(13060547-13060636)
chr5 (40-129)||(17657294-17657383)
chr5 (40-129)||(29922134-29922223)
chr5 (40-129)||(39154706-39154795)
chr5 (40-111)||(2531380-2531452)
chr5 (94-130)||(6025984-6026020)
chr5 (43-111)||(33803754-33803822)
chr5 (40-128)||(35536898-35536985)
chr5 (37-125)||(39990632-39990720)
[»] scaffold1130 (1 HSPs)
scaffold1130 (40-107)||(2325-2392)
[»] scaffold0157 (1 HSPs)
scaffold0157 (40-129)||(24799-24888)
[»] scaffold0004 (1 HSPs)
scaffold0004 (40-125)||(242585-242670)
[»] scaffold0100 (1 HSPs)
scaffold0100 (40-125)||(38398-38483)
[»] scaffold0291 (1 HSPs)
scaffold0291 (40-111)||(19625-19696)
[»] scaffold0006 (2 HSPs)
scaffold0006 (43-129)||(278941-279026)
scaffold0006 (46-111)||(40625-40690)
[»] scaffold0332 (1 HSPs)
scaffold0332 (42-129)||(14693-14780)


Alignment Details
Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 22303258 - 22303146
Alignment:
Q  18 gttttagacctcgtttaatttgagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggtttt 117  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  22303258 gttttaaacctcgtttgatttgagcttatgtaaatatataagtttttattttaatttataaactttcactaatgaaaattgtatcttcataaatggtttt 22303159  T
Q  118 ttcataaactacg 130  Q
    |||||||||||||    
T  22303158 ttcataaactacg 22303146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 4603280 - 4603366
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||||| || |||||||||||||||||| |||||||||||||||||    
T  4603280 ttatgtaaataaataagcttttattttaatttataaactctcactaacgaaaattgtatcttcataaactgttttttcataaactac 4603366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 39931493 - 39931578
Alignment:
Q  44 tatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||| |||||||||||||||| ||||||| || ||||||| || ||||||||||||||||| ||||||||||||||||||    
T  39931493 tatgtaaataaataagtttttattttattttataagctctcactaacgaaaattgtatcttcataaatggttttttcataaactac 39931578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 42617175 - 42617264
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| ||||||||||||||||||||||||  ||||||||| || |||  |||||||||||||  ||||||||||||||||    
T  42617175 agcttatgtaaataaataagtttttattttaatttataagttttcactaacgaaaatcatatcttcataaactattttttcataaactac 42617264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 19414256 - 19414168
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaacta 128  Q
    |||||||||||||| ||||| |||||||||| ||||||| || ||||||| || ||||||||||| ||||||||||||||| |||||||    
T  19414256 agcttatgtaaataaataagcttttattttactttataagctctcactaacgaaaattgtatcttaataaacggttttttcttaaacta 19414168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 15184672 - 15184598
Alignment:
Q  55 ataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||||||||||||||||||||||  | ||||||| || |||||||||||||||||| |||||||||||||||||    
T  15184672 ataagtttttattttaatttataagttctcactaacgaaaattgtatcttcataaactgttttttcataaactac 15184598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 9319189 - 9319100
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| ||||| |||||| ||||||| |||  ||||| |||||| ||||||| |||||||||| |||||||||||||||||    
T  9319189 agcttatgtaaataaataagcttttatgttaatttttaagttttcagtaatgaaaattgtagcttcataaactgttttttcataaactac 9319100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 129
Target Start/End: Complemental strand, 47202964 - 47202877
Alignment:
Q  42 cttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||| ||||||  |||| ||||||||||||||||||  | ||||||| || ||||||||||||||||| ||||||||||||||||||    
T  47202964 cttatataaataagtaagcttttattttaatttataagatctcactaacgaaaattgtatcttcataaatggttttttcataaactac 47202877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 19725435 - 19725349
Alignment:
Q  40 agcttatgtaaatatataagttttt-attttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaa 125  Q
    |||||||||||| | |||||||||| |||||||||||||| || |||||||||| |||| |||||||||| || |||||||||||||    
T  19725435 agcttatgtaaaaaaataagttttttattttaatttataagctctcactaatgaaaattatatcttcatagactgttttttcataaa 19725349  T

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Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 22303086 - 22303038
Alignment:
Q  190 gctctaaaataagctaatccaaacaggcccttagaatcgaactcgaaat 238  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22303086 gctctaaaataagctaattcaaacaggcccttagaatcgaactcgaaat 22303038  T

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Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 129
Target Start/End: Complemental strand, 8601344 - 8601253
Alignment:
Q  38 tgagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||| ||||| ||||| ||| || |||||||||||  |||||||||  | |||||||||||||||| | |||||||||||||||||    
T  8601344 tgagcttatgcaaataaataagctttaatgttaatttataatttttcactaacaaaaattgtatcttcataaccagttttttcataaactac 8601253  T

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Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 110
Target Start/End: Original strand, 23284743 - 23284806
Alignment:
Q  47 gtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaa 110  Q
    ||||||| |||||||||||||||||||||||| || ||||||| || |||||||||||||||||    
T  23284743 gtaaataaataagtttttattttaatttataagctctcactaacgaaaattgtatcttcataaa 23284806  T

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Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 46175926 - 46176013
Alignment:
Q  42 cttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||| |||||  ||||||||||||||||| || | ||||  || ||||||||||||||||||  ||||||||||||||||    
T  46175926 cttatgtaaataaataagcatttattttaatttataagctcttactagcgaaaattgtatcttcataaactattttttcataaactac 46176013  T

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Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 2141779 - 2141698
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataa 124  Q
    ||||||||||| ||| |||| ||||||||| ||||| || | |||||||| |||||||||||||||||| ||||||| ||||    
T  2141779 ttatgtaaatacataggtttctattttaatctataagctcttactaatgaaaattgtatcttcataaactgtttttttataa 2141698  T

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Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 12495589 - 12495678
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| |||||||||||| |||||||||||  | ||||||||||  |||||||||| || | | |||||||||||||||||    
T  12495589 agcttatgcaaataaataagtttttatgttaatttataagttctcactaatgaatattgtatcttgattagctgttttttcataaactac 12495678  T

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Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 2547991 - 2548080
Alignment:
Q  39 gagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaacta 128  Q
    ||||||||| ||||| |||||||||||| |||||||||||  | ||| ||  || |||| ||||||||||||  ||||||||||||||||    
T  2547991 gagcttatgcaaataaataagtttttatattaatttataagttctcattagcgaaaattttatcttcataaattgttttttcataaacta 2548080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 3966870 - 3966785
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaa 125  Q
    |||||||||||||| |||||||||||||||||||||||| || || |||| || ||  | |||||||||| | |||||| ||||||    
T  3966870 agcttatgtaaataaataagtttttattttaatttataagctctcgctaacgaaaaccgcatcttcataacctgtttttccataaa 3966785  T

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Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 129
Target Start/End: Complemental strand, 10046377 - 10046284
Alignment:
Q  36 tttgagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||||||||||||||||  |||| |||||| ||||||||||   ||||| ||| || |||||||| ||||||| | ||||||| |||||||||    
T  10046377 tttgagcttatgtaaataattaagcttttatgttaatttatatgttttcaataacgaaaattgtattttcataacctgtttttttataaactac 10046284  T

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Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 17222970 - 17222881
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||  ||||| |||||||||||| |||||| ||||  | | ||||| || |||||||||||||||| | |||||||||||||||||    
T  17222970 agcttattcaaataaataagtttttatgttaattcataagttctaactaacgaaaattgtatcttcataatctgttttttcataaactac 17222881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 29877780 - 29877691
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||||||||| |||||| |||||| ||||  | |||||||  | |||||||||||||||| | | |||||||||||||||    
T  29877780 agcttatgcaaatatataagcttttatgttaattcataagttctcactaacaaaaattgtatcttcataagctgctttttcataaactac 29877691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 825823 - 825735
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaacta 128  Q
    |||||||| ||||| ||||| |||||| |||||| |||| ||||||||||  | || ||||||||||| | | ||||||||||||||||    
T  825823 agcttatgcaaataaataagattttatgttaattcataagctttcactaacaaaaaatgtatcttcatgagctgttttttcataaacta 825735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 23335766 - 23335694
Alignment:
Q  57 aagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||| |||||| ||||  | ||||| |||| |||||||||||||||| | |||||||||||||||||    
T  23335766 aagtttttatgttaattcataagttctcacttatgaaaattgtatcttcataagctgttttttcataaactac 23335694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 9201789 - 9201706
Alignment:
Q  42 cttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaa 125  Q
    |||||||||||| |||||||||||||||||||||||| || || |||| || |||   |||||||||| | |||||| ||||||    
T  9201789 cttatgtaaataaataagtttttattttaatttataagctctcgctaacgaaaatcacatcttcataacctgtttttccataaa 9201706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 46704217 - 46704304
Alignment:
Q  42 cttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||| |||||  ||| ||||||| |||||| ||||  | |||||||||| |||| ||||||||||| | |||||||||||||||||    
T  46704217 cttatgcaaataagtaactttttatattaattcataagttctcactaatgaaaattttatcttcataagctgttttttcataaactac 46704304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 897108 - 897022
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||| ||||| ||||| |||||| |||||||||||  ||||||||| || ||| |||||| | ||||  |||||||||||||||||    
T  897108 ttatgcaaataaataagcttttatattaatttataagttttcactaacgaaaatcgtatctacgtaaattgttttttcataaactac 897022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 19298077 - 19298157
Alignment:
Q  40 agcttatgtaaata--tataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggtttttt 119  Q
    ||||||||||||||  |||||| ||||||||||||||||||| | ||| |||  | |||||||| |||||||||||||||||    
T  19298077 agcttatgtaaataaatataagcttttattttaatttataaattctcattaacaaaaattgtat-ttcataaacggtttttt 19298157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 130
Target Start/End: Original strand, 36254981 - 36255071
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactacg 130  Q
    |||||||| | ||| ||||| |||||| |||||| ||||  | |||||||| | |||||||||||||||| | ||||||||| ||||||||    
T  36254981 agcttatgcagataaataagcttttatgttaattcataagttctcactaattaaaattgtatcttcataagctgttttttcacaaactacg 36255071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 15179958 - 15179869
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| ||||| |||||||||||| |||||  | | ||||| || |||||||| ||||||| |  ||| ||||||||||||    
T  15179958 agcttatgtaaataaataagcttttattttaatctataagttctgactaacgaaaattgtattttcataatccatttcttcataaactac 15179869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 18630840 - 18630929
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| ||||| |||||| |||||| ||||  | ||||||| || || | ||||||||||| | |||||||||||||||||    
T  18630840 agcttatgcaaataaataagcttttatattaattcataagttctcactaacgaaaactttatcttcataagctgttttttcataaactac 18630929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 22117494 - 22117405
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| ||||| |||||||||||| |||||  | | ||||| || ||||| || ||||||| |  ||||||||||||||||    
T  22117494 agcttatgtaaatagataagcttttattttaatctataagttctgactaacgaaaattgcattttcataacccattttttcataaactac 22117405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 36741045 - 36740956
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| ||||| |||| | || ||| ||||  | |||||||||| |||||||||||||| ||| || ||||||||||||||    
T  36741045 agcttatgcaaataaataagcttttgtgttgattcataagttctcactaatgaaaattgtatcttcatgaactgtattttcataaactac 36740956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 38345767 - 38345856
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| ||||| |||||| |||||| ||||  | |  ||||| | ||||||||||||||||   |||||||||||||||||    
T  38345767 agcttatgtaaataaataagcttttatgttaattcataagttctggctaataaaaattgtatcttcataagttgttttttcataaactac 38345856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 48238077 - 48238166
Alignment:
Q  36 tttgagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaa 125  Q
    |||||| ||||| ||||| ||| ||||| || || ||||||||| ||||| ||| ||||||||||| |||||||   |||||||||||||    
T  48238077 tttgagtttatgcaaataaatacgttttcatgtttatttataaattttcattaaagataattgtattttcataagttgttttttcataaa 48238166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 48591369 - 48591458
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| ||||| |||||  |||||| ||||  | ||| ||| || |||||||||||||||| | |||||||||||||||||    
T  48591369 agcttatgcaaataaataagcttttacgttaattcataagttctcattaacgaaaattgtatcttcataagctgttttttcataaactac 48591458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 24101875 - 24101923
Alignment:
Q  30 gtttaatttgagcttatgtaaatatataagtttttattttaatttataa 78  Q
    ||||| |||||||||||| ||||| |||||||||||| |||||||||||    
T  24101875 gtttattttgagcttatgcaaataaataagtttttatgttaatttataa 24101923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 9153527 - 9153606
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggtttttt 119  Q
    |||||||| ||||| ||||  |||||| |||||||||||| | ||||| |||| |||||||| || |||||| |||||||    
T  9153527 agcttatgcaaataaataaacttttatgttaatttataaattctcactgatgaaaattgtattttaataaactgtttttt 9153606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 22273918 - 22273832
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||| ||||| ||||  |||||| |||||| ||||  | |||||||  | |||||||||||||||| | |||||||||||||||||    
T  22273918 ttatgcaaataaataaacttttatgttaattcataacttctcactaacaaaaattgtatcttcataagctgttttttcataaactac 22273832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 128
Target Start/End: Original strand, 55638036 - 55638114
Alignment:
Q  50 aatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaacta 128  Q
    |||| |||| ||||||| |||||||||||  | ||||||| |   |||||||||| |||||| ||||||||||||||||    
T  55638036 aataaataaatttttatgttaatttataagttctcactaacggagattgtatctttataaactgttttttcataaacta 55638114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 488329 - 488418
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| ||||| |||||| |||||| ||||  | |||||||| | ||||||||||| | || |  ||||||||||||||||    
T  488329 agcttatggaaataaataagcttttatgttaattcataagttctcactaataaaaattgtatctttacaagcaattttttcataaactac 488418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 4398151 - 4398240
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| ||||  ||| || |||| ||||||| ||| | ||| || |||| ||||||||||| |  ||||||||||||||||    
T  4398151 agcttatgtaaataaataaactttaatgttaaattataaatttttattaacgaaaattatatcttcataaccaattttttcataaactac 4398240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 26206320 - 26206389
Alignment:
Q  61 ttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactacg 130  Q
    ||||||||||||||||||  | | ||||| || ||| |||  ||||||||| ||||||||||||||||||    
T  26206320 ttttattttaatttataagttcttactaacgaaaatagtacattcataaactgttttttcataaactacg 26206389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 41229044 - 41228955
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| || || |||||| |||||| ||||  | | |||||||| |||||||||||||| |   |||||||||||||||||    
T  41229044 agcttatgcaaataaattagcttttatattaattcataagttctaactaatgaaaattgtatcttcatcagttgttttttcataaactac 41228955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 11679093 - 11679141
Alignment:
Q  61 ttttattttaatttataaactttcactaatgataattgtatcttcataa 109  Q
    |||||| |||||||||||| ||| ||||| || ||||||||||||||||    
T  11679093 ttttatgttaatttataaattttaactaacgaaaattgtatcttcataa 11679141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 11687372 - 11687420
Alignment:
Q  61 ttttattttaatttataaactttcactaatgataattgtatcttcataa 109  Q
    |||||| |||||||||||| ||| ||||| || ||||||||||||||||    
T  11687372 ttttatgttaatttataaattttaactaacgaaaattgtatcttcataa 11687420  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 32165206 - 32165295
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| |||||||||||||||||||||||| || ||||||| || |||||||||||||||||| |||||||||||||||||    
T  32165206 agcttatgtaaataaataagtttttattttaatttataagctctcactaacgaaaattgtatcttcataaactgttttttcataaactac 32165295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 1189524 - 1189440
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataa 124  Q
    |||||||||||||| ||||| ||| ||||||||||||||||| ||||||| || || ||||||||||||||| |||||| |||||    
T  1189524 agcttatgtaaataaataagctttaattttaatttataaactctcactaacgaaaagtgtatcttcataaacagtttttgcataa 1189440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 22708427 - 22708356
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaac 111  Q
    |||||||| ||||| |||||||||||||||||||||||||||  |||||| || ||||||||||||||||||    
T  22708427 agcttatgcaaataaataagtttttattttaatttataaactcccactaacgaaaattgtatcttcataaac 22708356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 1468315 - 1468227
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| |||||||||||||||||||||||| || | ||||| || ||| || ||||||||||| | |||||||||||||||    
T  1468315 agcttatgtaaataaataagtttttattttaatttataagctcttactaacgaaaatggtttcttcataaactg-tttttcataaactac 1468227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 10184275 - 10184364
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||||| |||||| ||||| |||||||||||||||||| || | ||||| || |||||| ||||||||||  |||||||||||||||||    
T  10184275 agcttatataaataaataagcttttattttaatttataagctcttactaacgaaaattgtttcttcataaattgttttttcataaactac 10184364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 29052473 - 29052389
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaa 125  Q
    |||||||||||||| ||||||||| |||||||||||||| || |||| || || ||||||||| |||||||| |||||||||||||    
T  29052473 agcttatgtaaataaataagtttt-attttaatttataagctctcacaaacgagaattgtatcatcataaactgttttttcataaa 29052389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 4808712 - 4808624
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaacta 128  Q
    |||||||||| |||  ||||||||||||||||||||||| |  | ||||| ||  ||||||||||||||||| ||||||||||||||||    
T  4808712 agcttatgtatataagtaagtttttattttaatttataagcccttactaacgaatattgtatcttcataaactgttttttcataaacta 4808624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 34223469 - 34223549
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaa-tgataattgtatcttcataaacggtttttt 119  Q
    |||||||||||||| |||||||||||||||||||||||| || |||||||   | |||||||||||||||||| |||||||    
T  34223469 agcttatgtaaataaataagtttttattttaatttataagctctcactaacaaaaaattgtatcttcataaactgtttttt 34223549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 9894916 - 9894837
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggtttttt 119  Q
    |||||||||||||| |||||||||||||||||||||||| || ||| ||| || |||||||  ||||||||| |||||||    
T  9894916 agcttatgtaaataaataagtttttattttaatttataagctctcaataacgaaaattgtaaattcataaactgtttttt 9894837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 32615362 - 32615449
Alignment:
Q  42 cttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||||||||||  |||| |||||||||||||||||  || ||||||| || |||||||||||||||||  |||||||||| ||||||    
T  32615362 cttatgtaaataagtaagcttttattttaatttatatgctctcactaacgaaaattgtatcttcataaatagttttttcatcaactac 32615449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 21609997 - 21610083
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||| ||||| ||||||||||||||||||||||||  | | ||||| || |||| ||| |||||||||  ||||||||||||||||    
T  21609997 ttatgcaaataaataagtttttattttaatttataagttcttactaacgaaaattatatattcataaactattttttcataaactac 21610083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 32675836 - 32675920
Alignment:
Q  42 cttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaac 126  Q
    |||||| ||||| |||||||||||| |||||| ||||  | |||||||||| ||||||||||||||||    |||||||||||||    
T  32675836 cttatgcaaataaataagtttttatattaattcataagttctcactaatgaaaattgtatcttcataagttattttttcataaac 32675920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 127
Target Start/End: Original strand, 9202344 - 9202431
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaact 127  Q
    ||||||||| |||| ||||| |||||| |||||| ||||  | |||||||| | |||||||||||||||  | |||||||||||||||    
T  9202344 agcttatgttaataaataagcttttatgttaattcataagttatcactaataaaaattgtatcttcatatgctgttttttcataaact 9202431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 10874125 - 10874036
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| ||||| |||||| |||||| ||||  |||||| ||  | |||||||||||||||| | ||||| |||||||||||    
T  10874125 agcttatgcaaataaataagcttttatgttaattcataagttttcaccaactaaaattgtatcttcataagctgttttctcataaactac 10874036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 6752953 - 6752885
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcata 108  Q
    |||||||| ||||| ||||| |||||| |||||| |||||   |||||||||| |||||||||||||||    
T  6752953 agcttatgcaaataaataagcttttatattaattcataaatcctcactaatgaaaattgtatcttcata 6752885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 10401763 - 10401819
Alignment:
Q  55 ataagtttttattttaatttataaactttcactaatgataattgtatcttcataaac 111  Q
    |||||||||||||||||||||||| || | ||||| || ||||||||||| ||||||    
T  10401763 ataagtttttattttaatttataagctcttactaacgaaaattgtatcttgataaac 10401819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 17300702 - 17300770
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaac 111  Q
    ||||||||||| |||| |||||||||||||||||||  | ||||||| || | |||||| |||||||||    
T  17300702 ttatgtaaataaataactttttattttaatttataagttgtcactaacgaaagttgtatattcataaac 17300770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 8014914 - 8014840
Alignment:
Q  55 ataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||| |||||| ||||||||| |  |||||||||  | |||||||||||||||  | |||||||||||||||||    
T  8014914 ataagcttttatgttaatttatcagttttcactaaccaaaattgtatcttcatatgcagttttttcataaactac 8014840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 17915083 - 17914997
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||| |||||| ||||| |||||||||||| |||||  | | ||||| || |||||||| ||||||| |  ||||||||||||||||    
T  17915083 ttatataaataaataagcttttattttaatctataagttctgactaacgaaaattgtattttcataacccattttttcataaactac 17914997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 23314763 - 23314845
Alignment:
Q  44 tatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaac 126  Q
    ||||||||||| |||| |||||||||||||||||| || | ||||| || || ||||| ||||| |||  |||||| ||||||    
T  23314763 tatgtaaatatgtaagcttttattttaatttataagctctgactaacgaaaactgtatattcatgaacaattttttgataaac 23314845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 23324930 - 23325012
Alignment:
Q  44 tatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaac 126  Q
    ||||||||||| |||| |||||||||||||||||| || | ||||| || || ||||| ||||| |||  |||||| ||||||    
T  23324930 tatgtaaatatgtaagcttttattttaatttataagctctgactaacgaaaactgtatattcatgaacaattttttgataaac 23325012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 2040128 - 2040205
Alignment:
Q  42 cttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggtttttt 119  Q
    |||||| ||||| |||||||||||| |||||||||||  | | |||||||| ||||||| ||| |||||  |||||||    
T  2040128 cttatgcaaataaataagtttttatattaatttataagttctaactaatgaaaattgtaactttataaattgtttttt 2040205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 13429548 - 13429507
Alignment:
Q  88 aatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||| ||||||||| |||||||| |||||||||||||||||    
T  13429548 aatgaaaattgtatcctcataaactgttttttcataaactac 13429507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 219
Target Start/End: Complemental strand, 1189424 - 1189396
Alignment:
Q  191 ctctaaaataagctaatccaaacaggccc 219  Q
    |||||||||||||||||||||||||||||    
T  1189424 ctctaaaataagctaatccaaacaggccc 1189396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 15053651 - 15053683
Alignment:
Q  43 ttatgtaaatatataagtttttattttaattta 75  Q
    ||||||||||| |||||||||||||||||||||    
T  15053651 ttatgtaaataaataagtttttattttaattta 15053683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 14675907 - 14675994
Alignment:
Q  42 cttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||| ||||||| |||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| |||||||||||||||||    
T  14675907 cttacgtaaataaataagtttttattttaatttataagctttcgctaatgaaaattgtatcttcataaactgttttttcataaactac 14675994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 991640 - 991551
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| ||||| ||||||||||||||||||||| ||||||| || || |||||||||||||| ||||||||||||||||||    
T  991640 agcttatgtaaataaataagcttttattttaatttataaactctcactaacgaaaagtgtatcttcataaatggttttttcataaactac 991551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 16958956 - 16958867
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||| ||| ||||| |||||||||||||||||| |||| ||||| || ||||||||||||||||||||||||||||||||||||    
T  16958956 agcttatgtatataaataagcttttattttaatttataagcttttactaacgaaaattgtatcttcataaacggttttttcataaactac 16958867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 127
Target Start/End: Complemental strand, 1312254 - 1312167
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaact 127  Q
    |||||||||||||| ||||  ||||||||||||||||||||| |||||||||| || ||||| |||||||||||||||||||||||||    
T  1312254 agcttatgtaaataaataaacttttattttaatttataaactctcactaatgaaaagtgtatattcataaacggttttttcataaact 1312167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 16932875 - 16932964
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||| ||| ||||| |||||||||||||||||| |||| ||||| || ||||||||||||||||| ||||||||||||||||||    
T  16932875 agcttatgtatataaataagcttttattttaatttataagcttttactaacgaaaattgtatcttcataaatggttttttcataaactac 16932964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 16938258 - 16938347
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||| ||| ||||| |||||||||||||||||| |||| ||||| || ||||||||||||||||| ||||||||||||||||||    
T  16938258 agcttatgtatataaataagcttttattttaatttataagcttttactaacgaaaattgtatcttcataaatggttttttcataaactac 16938347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 23137108 - 23137197
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||||||||||||  |||| |||||||||||||||||| || |||||||||| ||||||||||||||||||| ||||| ||||||||||    
T  23137108 agcttatgtaaataagtaagcttttattttaatttataagctctcactaatgaaaattgtatcttcataaacgatttttacataaactac 23137197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 22575727 - 22575642
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaa 125  Q
    |||||||||| ||| |||||||||||||||||||||||| || | ||||| || |||||||||||||||||| |||||||||||||    
T  22575727 agcttatgtagataaataagtttttattttaatttataagctcttactaacgaaaattgtatcttcataaactgttttttcataaa 22575642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 19914086 - 19913997
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| ||||| |||||||||||| ||||| |||| ||||| || |||| | ||||||||||| |||||||||||||||||    
T  19914086 agcttatgtaaataaataagcttttattttaatatataagcttttactaacgaaaattatctcttcataaaccgttttttcataaactac 19913997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 44799540 - 44799454
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||||||||| |||||||||||||||||||||||| || ||||||| ||  ||| |||||||||||||  |||||||| |||||||    
T  44799540 ttatgtaaataaataagtttttattttaatttataagctctcactaacgaatattctatcttcataaactattttttcaaaaactac 44799454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 22032903 - 22032814
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| |||||||||||| |||||||||||  | ||||||| || ||||||| |||||||||  |||||||||||||||||    
T  22032903 agcttatgcaaataaataagtttttatcttaatttataagttctcactaacgaaaattgtaccttcataaattgttttttcataaactac 22032814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 47654361 - 47654448
Alignment:
Q  42 cttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||| ||||| |||||||||||| |||||| ||||  | ||||||| || ||||||| |||||||||| |||||||||||||||||    
T  47654361 cttatgcaaataaataagtttttatcttaattcataagttctcactaacgaaaattgtaccttcataaactgttttttcataaactac 47654448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 35246806 - 35246723
Alignment:
Q  44 tatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||| ||||| |||||||||||||||||| |  ||||||| || ||||||||| |||||||  |||||||||||||||||    
T  35246806 tatgtaaataaataagcttttattttaatttataagccctcactaacgaaaattgtatcctcataaa--gttttttcataaactac 35246723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 28004724 - 28004635
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| ||||| |||||||||||||||||| || |  || | || | ||||||||||||||| ||||||||||||||||||    
T  28004724 agcttatgcaaataaataagcttttattttaatttataagctcttgctgacgaaatttgtatcttcataaatggttttttcataaactac 28004635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 7774695 - 7774781
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactacg 130  Q
    ||||||||||| ||||  ||||| ||||||||||||||| |||| || || |||||||||||||||||  ||||||||||||| ||||    
T  7774695 ttatgtaaataaataaacttttaatttaatttataaactctcaccaacgaaaattgtatcttcataaa-tgttttttcataaagtacg 7774781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 129
Target Start/End: Complemental strand, 20888713 - 20888626
Alignment:
Q  42 cttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||| |||||  ||||||||||| |||||||||||  ||||||  | || |||||||||||||||||  |||||||||||||||||    
T  20888713 cttatgcaaataagtaagtttttatgttaatttataagttttcacggaagaaaattgtatcttcataaattgttttttcataaactac 20888626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 125
Target Start/End: Original strand, 43818822 - 43818909
Alignment:
Q  39 gagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgt-atcttcataaacggttttttcataaa 125  Q
    ||||||||| ||||| |||||||||||| |||||| ||||  | |||||||||| |||||| | |||||||||| |||||||||||||    
T  43818822 gagcttatgcaaataaataagtttttatcttaattcataagttctcactaatgaaaattgtaaccttcataaactgttttttcataaa 43818909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 48949864 - 48949772
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttata------aactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||||||||| |||||||||||||||||||||||      | | |||||||| ||  ||| ||||||||||||| |||||||||||||||||    
T  48949864 ttatgtaaataaataagtttttattttaatttatatttataagccttcactaacgaatattatatcttcataaactgttttttcataaactac 48949772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 24371382 - 24371438
Alignment:
Q  55 ataagtttttattttaatttataaactttcactaatgataattgtatcttcataaac 111  Q
    |||||||||||||||| ||||||| || ||||||| || ||||||||||||||||||    
T  24371382 ataagtttttattttattttataagctctcactaacgaaaattgtatcttcataaac 24371438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 25908434 - 25908366
Alignment:
Q  41 gcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataa 109  Q
    ||||||| ||||| |||||||||||| |||||||||||  |||||| || || ||||||||||||||||    
T  25908434 gcttatgcaaataaataagtttttatgttaatttataacttttcacaaacgaaaattgtatcttcataa 25908366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 32848662 - 32848583
Alignment:
Q  49 aaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaacta 128  Q
    ||||| ||||| |||||| |||||||||||| ||| |||||||| |||||| | ||||| ||| ||||| ||||||||||    
T  32848662 aaataaataaggttttatgttaatttataaattttaactaatgaaaattgtgtattcatgaactgttttatcataaacta 32848583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 129
Target Start/End: Complemental strand, 12473498 - 12473405
Alignment:
Q  36 tttgagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||  ||||| ||||| || ||| |||||||||||  | |||| || || |||||| |||| |||||| |||||||||||||||||    
T  12473498 tttgagcttattcaaataaataagcttatatattaatttataagttctcacaaacgaaaattgtttctttataaactgttttttcataaactac 12473405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 29378786 - 29378697
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| ||||| |||||  |||||| ||||  | | ||||| || |||||||||||||||| | |||||||||||||||||    
T  29378786 agcttatgcaaataaataagcttttacgttaattcataagttcttactaacgaaaattgtatcttcataagctgttttttcataaactac 29378697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 1111387 - 1111352
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataa 78  Q
    ||||||||||| ||||||||||||||||||||||||    
T  1111387 ttatgtaaataaataagtttttattttaatttataa 1111352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 43391855 - 43391773
Alignment:
Q  47 gtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||||| |||||||||||| || ||||||||  |||||| ||  | |||| ||||||||||||   ||||||||||||||||    
T  43391855 gtaaataaataagtttttatatttatttataagttttcacaaacaaaaattatatcttcataaattattttttcataaactac 43391773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 16012811 - 16012750
Alignment:
Q  68 ttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||| ||||  ||||||||| || ||||||||||||| || | |||||||||||||||||    
T  16012811 ttaattcataagttttcactaacgaaaattgtatcttcagaagcagttttttcataaactac 16012750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 29778453 - 29778518
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttc 105  Q
    |||||||| ||||| |||| ||||||| ||| |||||||| |||||||||||| |||  |||||||    
T  29778453 agcttatgcaaataaataaatttttatattagtttataaattttcactaatgaaaatgatatcttc 29778518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 33288020 - 33288089
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataa 109  Q
    |||||||  ||||| |||||||||||| |||||| ||||  ||||||||| || || |||||||||||||    
T  33288020 agcttatccaaataaataagtttttatgttaattcataagttttcactaacgaaaactgtatcttcataa 33288089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 46744094 - 46744005
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| ||||| |||||| ||||||  |||  | ||||||| || |||||||||||||||  | |||||||||| ||||||    
T  46744094 agcttatgaaaataaataagcttttatgttaattcgtaagttctcactaacgaaaattgtatcttcatatgctgttttttcattaactac 46744005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 24371502 - 24371534
Alignment:
Q  190 gctctaaaataagctaatccaaacaggccctta 222  Q
    |||||||||||||||||||||||| ||||||||    
T  24371502 gctctaaaataagctaatccaaacgggccctta 24371534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 25536400 - 25536332
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaac 111  Q
    ||||||||||| |||| ||||||||||||||| ||| || ||| ||| || |||| | |||||||||||    
T  25536400 ttatgtaaatagataaatttttattttaatttgtaagctatcattaacgaaaattatgtcttcataaac 25536332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 35246662 - 35246630
Alignment:
Q  190 gctctaaaataagctaatccaaacaggccctta 222  Q
    |||||||||||||||||||||||| ||||||||    
T  35246662 gctctaaaataagctaatccaaacgggccctta 35246630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 43818959 - 43818991
Alignment:
Q  190 gctctaaaataagctaatccaaacaggccctta 222  Q
    ||||||||||||||||||||||||||| |||||    
T  43818959 gctctaaaataagctaatccaaacagggcctta 43818991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 48021608 - 48021660
Alignment:
Q  55 ataagtttttattttaatttataaactttcactaatgataattgtatcttcat 107  Q
    |||| ||||||| |||||| ||||  |||||||||||| ||||||||||||||    
T  48021608 ataattttttatattaattcataagttttcactaatgaaaattgtatcttcat 48021660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 29614334 - 29614245
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| |||||||| ||||||||||||||| || ||||||| || |||||||||||||||||| |||||||||||||||||    
T  29614334 agcttatgtaaataaataagtttatattttaatttataagctctcactaacgaaaattgtatcttcataaactgttttttcataaactac 29614245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 3645443 - 3645354
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| |||||||| ||||||||||||||| || ||||||| || |||||||||||||| ||| |||||||||||||||||    
T  3645443 agcttatgtaaataaataagtttatattttaatttataagctctcactaacgaaaattgtatcttcatgaactgttttttcataaactac 3645354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 1516040 - 1516128
Alignment:
Q  37 ttgagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaa 125  Q
    ||||||||||||||||| ||||||||||||||||||||||||  | |||||||||| ||||||||||| |||||| | |||| ||||||    
T  1516040 ttgagcttatgtaaataaataagtttttattttaatttataagttctcactaatgaaaattgtatctttataaactgattttccataaa 1516128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 20894640 - 20894554
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||||||||| |||||||| ||||||||||||||| || ||||||| || |||||||||||||| ||| ||||||||| |||||||    
T  20894640 ttatgtaaataaataagtttatattttaatttataagctctcactaacgaaaattgtatcttcatgaactgttttttcaaaaactac 20894554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 29830590 - 29830663
Alignment:
Q  46 tgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggtttttt 119  Q
    |||||||| ||||||||||||||||||||||||  | ||||||| || |||||||||||||||||| |||||||    
T  29830590 tgtaaataaataagtttttattttaatttataagttctcactaacgaaaattgtatcttcataaactgtttttt 29830663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 37778268 - 37778185
Alignment:
Q  46 tgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| ||||||||||||||||||  | |||||||  | |||||||||||||||| || ||||||||||||||||    
T  37778268 tgtaaataaataagcttttattttaatttataagttctcactaacaaaaattgtatcttcataaccgattttttcataaactac 37778185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 40240522 - 40240611
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| ||||| |||||| |||||| |||| || ||||||| || ||||||||||||||||   |||||||||||||||||    
T  40240522 agcttatgcaaataaataagcttttatcttaattcataagctctcactaacgaaaattgtatcttcataagttgttttttcataaactac 40240611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 42381208 - 42381284
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggtttttt 119  Q
    |||||||||||  ||||||||||||||||||||||| || | ||||| || |||| ||||||||||||| |||||||    
T  42381208 ttatgtaaataattaagtttttattttaatttataagctcttactaacgaaaattttatcttcataaactgtttttt 42381284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 42409922 - 42409998
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggtttttt 119  Q
    |||||||||||  ||||||||||||||||||||||| || | ||||| || |||| ||||||||||||| |||||||    
T  42409922 ttatgtaaataattaagtttttattttaatttataagctcttactaacgagaattttatcttcataaactgtttttt 42409998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 4257243 - 4257336
Alignment:
Q  40 agcttatgtaaatatataagttt--ttattttaatttataaactttcactaatgataattgtatcttcataaacgg--ttttttcataaactac 129  Q
    |||||||||||||| ||||||||  || ||||||||||||| || ||||||  || |||||||||||||||||| |  ||||||||||||||||    
T  4257243 agcttatgtaaataaataagtttgttttttttaatttataagctctcactagcgaaaattgtatcttcataaactgttttttttcataaactac 4257336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 42956126 - 42956213
Alignment:
Q  42 cttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||| ||||| |||||||||||| |||||||||||  | ||||||| || ||||||||||| |||| | ||||| |||||||||||    
T  42956126 cttatgcaaataaataagtttttatgttaatttataagttctcactaacgaaaattgtatctttataagctgttttatcataaactac 42956213  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 12004437 - 12004387
Alignment:
Q  36 tttgagcttatgtaaatatataagtttttattttaatttataaactttcac 86  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||| ||||    
T  12004437 tttgagcttatgtaaataaataagcttttattttaatttataaactctcac 12004387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 17752076 - 17752162
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaac 126  Q
    |||||||||||||| ||||  |||||| |||||||||||  | | ||||| || |||||||||||||||||| | | ||||||||||    
T  17752076 agcttatgtaaataaataaacttttatgttaatttataagttcttactaacgaaaattgtatcttcataaactgatctttcataaac 17752162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 19053396 - 19053482
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaac 126  Q
    |||||||||||||| ||||  |||||| |||||||||||  | | ||||| || |||||||||||||||||| | | ||||||||||    
T  19053396 agcttatgtaaataaataaacttttatgttaatttataagttcttactaacgaaaattgtatcttcataaactgatctttcataaac 19053482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 53218000 - 53218074
Alignment:
Q  55 ataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||| ||||||||||||||||||  | ||||||| || ||||||||||||| ||   |||||||||||||||||    
T  53218000 ataagcttttattttaatttataagttctcactaacgaaaattgtatcttcaaaagttgttttttcataaactac 53218074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 7292809 - 7292733
Alignment:
Q  49 aaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaacta 128  Q
    ||||| |||||||||||| ||||||  ||| |||||||||| |||||   |||| |||||||| ||||||||||||||||    
T  7292809 aaataaataagtttttatgttaattcctaagctttcactaaggataa---tatcatcataaactgttttttcataaacta 7292733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 129
Target Start/End: Original strand, 28741154 - 28741248
Alignment:
Q  39 gagcttatgtaaatatataagtttttattt----taatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||||||||||||| |||||||||| |||    ||||| ||||  | ||||||| || ||||||| |||||||| | |||||||||||||||||    
T  28741154 gagcttatgtaaataaataagtttttttttatcttaattcataagttctcactaacgaaaattgtaccttcataatctgttttttcataaactac 28741248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 25341412 - 25341340
Alignment:
Q  39 gagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaac 111  Q
    ||||||||||||||| |||||||||||| |||||| | ||  |||| |||| || |||| |||||||||||||    
T  25341412 gagcttatgtaaataaataagtttttatattaattcacaagttttccctaacgaaaattttatcttcataaac 25341340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 29830718 - 29830782
Alignment:
Q  55 ataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggtttttt 119  Q
    ||||||||||||||||||||||||  | ||| |||  | |||||||||||||||||| |||||||    
T  29830718 ataagtttttattttaatttataagttctcagtaacaaaaattgtatcttcataaactgtttttt 29830782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 42615039 - 42615083
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcact 87  Q
    ||||||||||| ||||||||| ||||||||||||||||| |||||    
T  42615039 ttatgtaaataaataagttttcattttaatttataaactctcact 42615083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 37243608 - 37243517
Alignment:
Q  39 gagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactacg 130  Q
    ||||||||| |||||  |||| |||||| |||||| ||||  | |||| ||||| || |||| ||||||||||  |||||||||||||||||    
T  37243608 gagcttatgcaaataagtaagcttttatcttaattcataagttctcaccaatgaaaagtgtaccttcataaactattttttcataaactacg 37243517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 2145609 - 2145695
Alignment:
Q  42 cttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaacta 128  Q
    |||||| ||||| |||||||||||| |||||||||||  ||||| |||  | || || ||||||||||||  |||||||| ||||||    
T  2145609 cttatgcaaataaataagtttttatgttaatttataagatttcattaacaaaaagtgaatcttcataaacaattttttcacaaacta 2145695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 38524230 - 38524140
Alignment:
Q  39 gagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||||||| ||||| ||||| |||||| |||||| ||||  | | ||||| || ||||| || |||||||| | ||||||||||||||||    
T  38524230 gagcttatgcaaataaataagcttttatgttaattcataagatcttactaacgaaaattgcatattcataaatgattttttcataaactac 38524140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 53787696 - 53787785
Alignment:
Q  39 gagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaacta 128  Q
    ||||||||| ||||| |||||||||||| |||||| ||||  | ||| |||  | |||| |||||| |||||| |||||||| |||||||    
T  53787696 gagcttatgcaaataaataagtttttatcttaattcataagttctcaataacaaaaattatatctttataaactgttttttcgtaaacta 53787785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 10449122 - 10449050
Alignment:
Q  36 tttgagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcata 108  Q
    |||||||||||| ||||| |||||||||||| |||||| ||||  | ||||||| || |||| || |||||||    
T  10449122 tttgagcttatgcaaataaataagtttttatcttaattcataagttctcactaacgaaaattataccttcata 10449050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 20685917 - 20685837
Alignment:
Q  49 aaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||| ||||||||||||  ||||| | ||  | |||||||||| ||||||||||||||||   ||||||| |||||||||    
T  20685917 aaataaataagtttttatgataattcacaagttctcactaatgaaaattgtatcttcataagttgttttttgataaactac 20685837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 27769800 - 27769752
Alignment:
Q  30 gtttaatttgagcttatgtaaatatataagtttttattttaatttataa 78  Q
    ||||| |||||||||||| ||||| ||||| |||||| |||||||||||    
T  27769800 gtttattttgagcttatgcaaataaataagcttttatgttaatttataa 27769752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 28623222 - 28623270
Alignment:
Q  61 ttttattttaatttataaactttcactaatgataattgtatcttcataa 109  Q
    |||||||||||||||||||||  || ||| || ||||||||||||||||    
T  28623222 ttttattttaatttataaactcccaataacgaaaattgtatcttcataa 28623270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 30321675 - 30321762
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaacta 128  Q
    |||||||| ||||| |||||  ||||||| |||||||||  |||||| ||||| |||||||||||| | ||| | ||| ||||||||||    
T  30321675 agcttatgcaaataaataagcctttattt-aatttataagttttcaccaatgaaaattgtatcttcgtgaactgatttatcataaacta 30321762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 35583670 - 35583734
Alignment:
Q  45 atgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataa 109  Q
    ||||||||| |||| ||||||| |||||||||||   ||||||||  | ||||||||||||||||    
T  35583670 atgtaaataaataaatttttatgttaatttataagtcttcactaactaaaattgtatcttcataa 35583734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 47403709 - 47403777
Alignment:
Q  42 cttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaa 110  Q
    |||||| ||||| |||| ||||||| ||||||||||| |  |||| || || |||||||||||||||||    
T  47403709 cttatgcaaataaataaatttttatgttaatttataagccctcacaaacgaaaattgtatcttcataaa 47403777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 17628370 - 17628459
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| ||||| ||||||||||||||| || || ||||||| || ||||||||||||||||||||||||||||||||||||    
T  17628370 agcttatgtaaataaataagcttttattttaatttagaagctctcactaacgaaaattgtatcttcataaacggttttttcataaactac 17628459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 15632055 - 15631960
Alignment:
Q  30 gtttaatttgagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaa 125  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||  || ||||||| || |||||||| ||||||||| |||||||||||||    
T  15632055 gtttattttgagcttatgtaaataaataagtttttattttaatttatatgctctcactaacgaaaattgtattttcataaacagttttttcataaa 15631960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 42591523 - 42591438
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaa 125  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||| || || |||||||||||||||  ||||||||||||    
T  42591523 agcttatgtaaataaataagtttttattttaatttataagctttcactaacgaaaagtgtatcttcataaactattttttcataaa 42591438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 15791524 - 15791435
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| ||||| |||||||||||||||||| || ||| ||| || |||||||||||||| |||| ||||||||||||||||    
T  15791524 agcttatgtaaataaataagcttttattttaatttataagctctcattaacgaaaattgtatcttcattaacgattttttcataaactac 15791435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 32497217 - 32497306
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| ||||  |||||||||||||||||| || ||||||| || ||||||||| |||||||| |||||||||||||||||    
T  32497217 agcttatgtaaataaataaacttttattttaatttataagctctcactaacgaaaattgtatcctcataaactgttttttcataaactac 32497306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 127
Target Start/End: Original strand, 15235106 - 15235193
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaact 127  Q
    |||||||||||||| |||||||||||||||||||||||| || | ||||| || ||| || ||||||||||| |||||||||||||||    
T  15235106 agcttatgtaaataaataagtttttattttaatttataagctcttactaacgaaaatggtttcttcataaaccgttttttcataaact 15235193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 35275833 - 35275932
Alignment:
Q  30 gtttaatttgagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||| |||||||||||||||||| ||||  ||||||||||||||||||| | ||||||| || |||||||| ||| ||||| | |||||||||||||||    
T  35275833 gtttagtttgagcttatgtaaataaataaacttttattttaatttataaaatctcactaacgaaaattgtatattcctaaacaggtttttcataaactac 35275932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 3116009 - 3116096
Alignment:
Q  42 cttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||||||||||  |||| ||||||||||||||||||  | | ||||| || ||||||||||||||||| ||||||||||||||||||    
T  3116009 cttatgtaaataagtaagcttttattttaatttataagatcttactaacgaaaattgtatcttcataaatggttttttcataaactac 3116096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 25485890 - 25485800
Alignment:
Q  39 gagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||||||| ||||| |||| ||||||| |||||||||||| ||||||||  || |||| ||||||||||||  |||||||||||||||||    
T  25485890 gagcttatgcaaataaataaatttttatattaatttataaattttcactagcgaaaattttatcttcataaattgttttttcataaactac 25485800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 19395915 - 19395846
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataa 109  Q
    ||||||| || ||| |||||||||||||||||||||||| |||||||||| || ||||||||||||||||    
T  19395915 agcttatatatataaataagtttttattttaatttataagctttcactaacgaaaattgtatcttcataa 19395846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 5243351 - 5243438
Alignment:
Q  42 cttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||| ||||| |||||||||||||||||  || ||  ||| || ||||||||||||||||||  ||||||||||||||||    
T  5243351 cttatgtaaataaataagcttttattttaatttatatgctctccgtaacgaaaattgtatcttcataaactattttttcataaactac 5243438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 8061957 - 8062024
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaa 110  Q
    ||||||||||| |||| ||||||||||||||||||| || |||| ||||| |||||||||||||||||    
T  8061957 ttatgtaaataaataaatttttattttaatttataagctctcacaaatgaaaattgtatcttcataaa 8062024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 36259226 - 36259325
Alignment:
Q  30 gtttaatttgagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||| |||||||||||| ||||| ||||| |||||| |||||||||||   |||| ||| || |||||||| || |||||| |||||||||||||||||    
T  36259226 gtttattttgagcttatgcaaataaataagcttttatattaatttataagtcttcattaacgaaaattgtatgtttataaactgttttttcataaactac 36259325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 14461006 - 14461076
Alignment:
Q  60 tttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactacg 130  Q
    ||||||| |||||||||||  | |||||||||| ||||||||||| |||||| ||||||||||||||||||    
T  14461006 tttttatgttaatttataagttctcactaatgaaaattgtatctttataaactgttttttcataaactacg 14461076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 16888914 - 16889000
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||| ||||| ||||| |||||| |||| | ||||| | |||||||||| |||||||||||||||| | |||||||||||||||||    
T  16888914 ttatgcaaataaataagcttttatgttaagtcataaattctcactaatgaaaattgtatcttcataagctgttttttcataaactac 16889000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 17349019 - 17348942
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggtttt 117  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||| ||  || ||| |||| ||||||||| |||||    
T  17349019 agcttatgtaaataaataagtttttattttaatttataaactctcagtagagaaaatcgtattttcataaactgtttt 17348942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 8410274 - 8410203
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaac 111  Q
    ||||| |||||||| ||||| ||||||||||||||| || || ||||||| || ||||||||||||||||||    
T  8410274 agcttctgtaaataaataagcttttattttaatttacaagctctcactaacgaaaattgtatcttcataaac 8410203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 37329359 - 37329446
Alignment:
Q  42 cttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||| ||||| ||||| |||||| |||||||||||  | |||| || || |||||||||||||||| | |||||||||||||||||    
T  37329359 cttatgcaaataaataagcttttatgttaatttataagttctcaccaacgaaaattgtatcttcataagctgttttttcataaactac 37329446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 19220311 - 19220225
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||| ||||| ||||| |||||||||||||||||| || ||| ||  || ||||| |||||||||||  |||||||||||||||||    
T  19220311 ttatgcaaataaataagcttttattttaatttataatctctcattatcgaaaattgcatcttcataaatagttttttcataaactac 19220225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 22088354 - 22088429
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggtttttt 119  Q
    |||||||||||||| ||||  |||||||||||||||||| || |||||||    |||||||||||||||||| |||||||    
T  22088354 agcttatgtaaataaataaccttttattttaatttataagctctcactaa----aattgtatcttcataaacagtttttt 22088429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 35897564 - 35897626
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatc 102  Q
    |||||||||||||| ||||  |||||| |||||||||||| |||||||||||| |||||||||    
T  35897564 agcttatgtaaataaataaacttttatgttaatttataaattttcactaatgaaaattgtatc 35897626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 3069799 - 3069888
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||||||  |||| ||||| |||||| |||||| ||||  | |||||| ||| |||||||||||||||| | |||||||||||||||||    
T  3069799 agcttatgacaataaataagcttttatgttaattcataagttctcactagtgaaaattgtatcttcataagctgttttttcataaactac 3069888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 17814331 - 17814242
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| ||||| |||||||||||| |||||  | | ||||| || |||||||| ||||||| |  ||||||||||||||||    
T  17814331 agcttatgtaaataaataagcttttattttaatctataagttctgactaacgaaaattgtattttcataacccattttttcataaactac 17814242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 19285024 - 19284960
Alignment:
Q  55 ataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggtttttt 119  Q
    |||| ||||||||||||| |||||  ||||||||| || |||||||||||||||||| |||||||    
T  19285024 ataaatttttattttaatctataatttttcactaacgaaaattgtatcttcataaactgtttttt 19284960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 26988286 - 26988200
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||| ||||| || || |||||| |||||| ||||  ||| ||||| || |||||||||||||||| | |||||||||||||||||    
T  26988286 ttatgcaaataaattagcttttatgttaattcataagtttttactaacgacaattgtatcttcataagctgttttttcataaactac 26988200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 5347295 - 5347206
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| ||||| |||||||||||| |||||  | | | ||| || |||||||| ||||||| |  ||||||||||||||||    
T  5347295 agcttatgtaaataaataagcttttattttaatctataagttctgattaacgaaaattgtattttcataacccattttttcataaactac 5347206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 13412399 - 13412487
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||||||| |||| ||||| |||  ||||||||||||| || |||||||  | | |||||||||||| || ||||||||||||||||||    
T  13412399 agcttatgtgaataaataagctttc-ttttaatttataagctctcactaacaaaatttgtatcttcatgaatggttttttcataaactac 13412487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 15515292 - 15515381
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||| ||||||| ||||| ||| || |||||| ||||  | ||||||| || |||||||||||||||| |  ||||||||||||||||    
T  15515292 agcttaagtaaataaataagctttcatgttaattcataagttctcactaacgaaaattgtatcttcataagctcttttttcataaactac 15515381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 28690145 - 28690056
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| ||||| |||||| |||||| | ||  | |||||||| | |||||||||||||||| | |||| ||||||||||||    
T  28690145 agcttatgcaaataaataagcttttatgttaattcagaatttctcactaataaaaattgtatcttcataagctgtttgttcataaactac 28690056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 41196655 - 41196744
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| |||||  ||||| |||||| | || || |||||||  | |||||||||||||||| | |||||||||||||||||    
T  41196655 agcttatgcaaataaataagcctttatgttaattcacaagctctcactaacaaaaattgtatcttcataagctgttttttcataaactac 41196744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 48819440 - 48819351
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| ||||| |||||| |||||| ||||  | |||||||  | || ||||||||||||| | |||||||||||||||||    
T  48819440 agcttatgcaaataaataagcttttatgttaattcataagttctcactaacaaaaaatgtatcttcataagctgttttttcataaactac 48819351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 46500947 - 46501035
Alignment:
Q  42 cttatgtaaatatataagtttttattttaatttataaactttcactaatg-ataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||| ||||| ||||| |||||| || ||||||||  ||||||||| | | |||||||||||||||| |  ||||||||||||||||    
T  46500947 cttatgcaaataaataagcttttatgttgatttataagttttcactaacggaaaattgtatcttcataacctattttttcataaactac 46501035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 49822869 - 49822817
Alignment:
Q  48 taaatatataagtttttattttaatttataaactttcactaatgataattgta 100  Q
    |||||| ||||||||||||||||||| ||||| ||||||||| || |||||||    
T  49822869 taaataaataagtttttattttaattcataaattttcactaacgaaaattgta 49822817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 16708937 - 16708854
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaac 126  Q
    ||||| ||||| |||| ||||||| |||||| ||||  | | |||||||| |||||||| ||||||||  ||||||||||||||    
T  16708937 ttatgcaaataaataaatttttatgttaattcataagatcttactaatgaaaattgtatattcataaattgttttttcataaac 16708854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 31378723 - 31378785
Alignment:
Q  67 tttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||||||||||  ||| |||||  | ||||||||||| ||||||| ||||||||||||||||    
T  31378723 tttaatttataagtttttactaacaaaaattgtatctttataaacgtttttttcataaactac 31378785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 4068256 - 4068167
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| ||||  |||||| |||||| ||||  | ||||||| || ||| ||||||||||||   |||||||||||||||||    
T  4068256 agcttatgcaaataaataaacttttatattaattcataagttctcactaacgaaaatagtatcttcataagttgttttttcataaactac 4068167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 6337701 - 6337790
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||| | ||||| |||||| |||||| ||||  | || ||||  | |||||||||||||||| | |||||||||||||||||    
T  6337701 agcttatgcaaacaaataagcttttatgttaattcataagttctcgctaacaaaaattgtatcttcataagctgttttttcataaactac 6337790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 9572729 - 9572818
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| ||||| |||||| |||||| ||||  | |||||||  | || | ||||||||||||  |||||||||||||||||    
T  9572729 agcttatgcaaataaataagcttttatattaattcataagttctcactaacaaaaactttatcttcataaattgttttttcataaactac 9572818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 129
Target Start/End: Complemental strand, 12256751 - 12256659
Alignment:
Q  36 tttgagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||  ||||| |||| |||||||||||||| ||||  | | ||||| || ||||||| |||||||||  | |||||||||||||||    
T  12256751 tttgagcttatacaaataaataaatttttattttaattcataagttcttactaacgaaaattgtaccttcataaattg-tttttcataaactac 12256659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 35282539 - 35282628
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| |||   |||||| |||||| ||||  |||||||||| | |||| |||||||||||   |||||||||||||||||    
T  35282539 agcttatgcaaataaatagacttttatattaattcataagttttcactaattaaaattttatcttcataagttgttttttcataaactac 35282628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 47413513 - 47413424
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| ||||| |||||| |||||||||||  |||||| ||    |||| ||||||||||| | ||| |||||||||||||    
T  47413513 agcttatgcaaataaataagcttttatgttaatttataatttttcaccaacacaaattatatcttcataacctgttatttcataaactac 47413424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 12871435 - 12871491
Alignment:
Q  55 ataagtttttattttaatttataaactttcactaatgataattgtatcttcataaac 111  Q
    |||||||||||| |||||| ||||  ||||| |||||| ||| ||||||||||||||    
T  12871435 ataagtttttatgttaattcataagttttcattaatgaaaatggtatcttcataaac 12871491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 129
Target Start/End: Original strand, 26435177 - 26435209
Alignment:
Q  97 tgtatcttcataaacggttttttcataaactac 129  Q
    ||||||||||||||| |||||||||||||||||    
T  26435177 tgtatcttcataaacagttttttcataaactac 26435209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 12607220 - 12607131
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| ||||| |||||||||||||||||| || ||||||| |  |||||||||||||||||| |||||||||||||||||    
T  12607220 agcttatgtaaataaataagcttttattttaatttataagctctcactaacggaaattgtatcttcataaaccgttttttcataaactac 12607131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 42102247 - 42102158
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| ||||| |||||||||||||||||| || ||| ||| || |||||||||||||| |||||||||||||||||||||    
T  42102247 agcttatgtaaataaataagcttttattttaatttataacctctcattaacgaaaattgtatcttcattaacggttttttcataaactac 42102158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 29218196 - 29218276
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttc 120  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||  |||||||    
T  29218196 agcttatgtaaatacataagtttttattttaatttataaactctcactaatgaaaattatatcttcataaactattttttc 29218276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 129
Target Start/End: Complemental strand, 11988335 - 11988248
Alignment:
Q  42 cttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||| ||| | |||||||||||||||||| || ||||||| || ||||||||||||||||||||||||||||| ||||||    
T  11988335 cttatgtaaataaatatgcttttattttaatttataagctctcactaacgaaaattgtatcttcataaacggttttttcatgaactac 11988248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 42363262 - 42363351
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| ||||| ||||||||||||||| ||  | |||||||  | ||||||||||||||||||||||||||||||||||||    
T  42363262 agcttatgtaaataaataagcttttattttaatttaaaagttctcactaacaaaaattgtatcttcataaacggttttttcataaactac 42363351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 37410858 - 37410947
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| |||||||| |||||||||||||||  | | ||||| || |||||||||||||| ||| |||||||||||||||||    
T  37410858 agcttatgtaaataaataagtttatattttaatttataagttcttactaacgaaaattgtatcttcatgaactgttttttcataaactac 37410947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 38338796 - 38338885
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| ||||||||||||||||||||||||  | ||||||| || |||  |||||||||||||  ||||||||||||||||    
T  38338796 agcttatgtaaataaataagtttttattttaatttataagttctcactaacgaaaatcatatcttcataaactattttttcataaactac 38338885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 19925698 - 19925613
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaa 125  Q
    |||||||||||||| |||||| ||||||||||||| ||| || ||||||| || |||||||||||||||||  |||||||| ||||    
T  19925698 agcttatgtaaataaataagtatttattttaatttgtaagctctcactaacgaaaattgtatcttcataaattgttttttcgtaaa 19925613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 38195627 - 38195538
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||| ||||||| ||||||||||||||||||||||||||| ||| |||  | |||||||| | ||||||| |||||||| ||||||||    
T  38195627 agcttacgtaaataaataagtttttattttaatttataaactctcattaacaaaaattgtatttccataaactgttttttcgtaaactac 38195538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 32751276 - 32751189
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcat-aaacggttttttcataaactac 129  Q
    ||||||||||| |||| |||||||||||||||||||||||| ||||| || |||||||| || || ||| | ||||||||||||||||    
T  32751276 ttatgtaaataaataaatttttattttaatttataaacttttactaacgaaaattgtatttttataaaatgtttttttcataaactac 32751189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 218202 - 218287
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||  ||||||||||||||||||||||| || | ||||| || |||||||||||||||||  | |||||||||||||||    
T  218202 ttatgtaaataagtaagtttttattttaatttataagctattactaacgaaaattgtatcttcataaatag-tttttcataaactac 218287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 694762 - 694847
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||  ||||||||||||||||||||||| || | ||||| || |||||||||||||||||  | |||||||||||||||    
T  694762 ttatgtaaataagtaagtttttattttaatttataagctattactaacgaaaattgtatcttcataaatag-tttttcataaactac 694847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 698971 - 699056
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||  ||||||||||||||||||||||| || | ||||| || |||||||||||||||||  | |||||||||||||||    
T  698971 ttatgtaaataagtaagtttttattttaatttataagctattactaacgaaaattgtatcttcataaatag-tttttcataaactac 699056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 731825 - 731910
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||  ||||||||||||||||||||||| || | ||||| || |||||||||||||||||  | |||||||||||||||    
T  731825 ttatgtaaataagtaagtttttattttaatttataagctattactaacgaaaattgtatcttcataaatag-tttttcataaactac 731910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 855721 - 855806
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||  ||||||||||||||||||||||| || | ||||| || |||||||||||||||||  | |||||||||||||||    
T  855721 ttatgtaaataagtaagtttttattttaatttataagctattactaacgaaaattgtatcttcataaatag-tttttcataaactac 855806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 35055562 - 35055484
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggtttttt 119  Q
    |||||||||||||| ||||| |||||||| |||| |||| || ||||||| || ||||||||||||||||| ||||||||    
T  35055562 agcttatgtaaataaataagcttttattt-aattcataagctctcactaacgaaaattgtatcttcataaatggtttttt 35055484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 129
Target Start/End: Original strand, 24866895 - 24866985
Alignment:
Q  39 gagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||||||| ||||| |||||||||||| |||||||||||  | ||  ||| || ||||||| |||||||| | |||||||||||||||||    
T  24866895 gagcttatgcaaataaataagtttttatcttaatttataagttctcgataacgaaaattgtaccttcataagctgttttttcataaactac 24866985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 129
Target Start/End: Original strand, 31079110 - 31079200
Alignment:
Q  39 gagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||||||| ||||| |||||||||||| |||||| ||||  ||||||||  || ||||||| ||| |||||| |||||||| ||||||||    
T  31079110 gagcttatgcaaataaataagtttttatcttaattcataagttttcactatcgaaaattgtaactttataaacagttttttcgtaaactac 31079200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 25333646 - 25333715
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataa 109  Q
    |||||||||||||| ||||| |||||| |||||| ||||  ||||||||| || ||||||||||||||||    
T  25333646 agcttatgtaaataaataagcttttatgttaattcataagttttcactaacgaaaattgtatcttcataa 25333715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 38895791 - 38895711
Alignment:
Q  49 aaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||| |||||||||||| |||||||||||  |||||||||  |  ||||||||||||||||   ||||||||||||||||    
T  38895791 aaataaataagtttttatattaatttataagttttcactaacaaatattgtatcttcataaattattttttcataaactac 38895711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 42667138 - 42667050
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaacta 128  Q
    |||||| ||||||| ||||  ||||||||||||||||||  ||| ||||| || ||||||||| || ||||| |||||| |||||||||    
T  42667138 agcttacgtaaataaataaacttttattttaatttataagtttttactaacgagaattgtatcctcctaaaccgtttttccataaacta 42667050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 25671835 - 25671902
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataa 109  Q
    |||||||||||||| ||||| |||||| |||||||||||  ||||||||| |  ||||||||||||||||    
T  25671835 agcttatgtaaataaataagcttttatgttaatttataagttttcactaacg--aattgtatcttcataa 25671902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 24087312 - 24087223
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacg-gttttttcataaacta 128  Q
    |||||||| ||||| ||||| ||||||||||||||||||  ||||| ||| || ||| |||||| | ||||||  |||||||||||||||    
T  24087312 agcttatgcaaataaataagcttttattttaatttataagttttcattaacgaaaatggtatctccgtaaacgttttttttcataaacta 24087223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 119
Target Start/End: Original strand, 16926669 - 16926752
Alignment:
Q  36 tttgagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggtttttt 119  Q
    |||||| ||||| ||||| |||||||||||| |||||||||||  | ||||||| |  |||||| |||| |||||| |||||||    
T  16926669 tttgagtttatgcaaataaataagtttttatgttaatttataagttctcactaacggaaattgtttctttataaactgtttttt 16926752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 129
Target Start/End: Original strand, 35168440 - 35168475
Alignment:
Q  94 aattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||||||| |||||||||||||||||    
T  35168440 aattgtatcttcataaactgttttttcataaactac 35168475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 3664276 - 3664238
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataa 78  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  3664276 agcttatgtaaataaataggtttttattttaatttataa 3664238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 119
Target Start/End: Complemental strand, 31459187 - 31459109
Alignment:
Q  41 gcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggtttttt 119  Q
    ||||||| ||||| ||||||||||||  ||||||||||| ||| | |||| | |||||| |||| |||||| |||||||    
T  31459187 gcttatgcaaataaataagtttttatgataatttataaattttaattaataaaaattgtttctttataaactgtttttt 31459109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 16972301 - 16972390
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| ||||  |||||| || ||| ||||  | ||||||| || |||||||||||||||| | |||||||||| ||||||    
T  16972301 agcttatgcaaataaataaacttttatattgattcataagttatcactaacgaaaattgtatcttcataagctgttttttcatgaactac 16972390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 32924167 - 32924246
Alignment:
Q  49 aaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||| ||||| |||||| |||||| ||||  ||||||||| || |||| |||||||||||   |||||||||||||||||    
T  32924167 aaataaataagcttttatattaattcataagttttcactaa-gaaaattttatcttcataagttgttttttcataaactac 32924246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 38338946 - 38338978
Alignment:
Q  190 gctctaaaataagctaatccaaacaggccctta 222  Q
    |||||||||||||||||||||||| ||||||||    
T  38338946 gctctaaaataagctaatccaaacgggccctta 38338978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 32521991 - 32522080
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| |||||||| ||||||||||||||| || | ||||| || |||||||||||||| ||| |||||||||||||||||    
T  32521991 agcttatgtaaataaataagtttatattttaatttataagctcttactaacgaaaattgtatcttcatgaactgttttttcataaactac 32522080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 40301503 - 40301421
Alignment:
Q  36 tttgagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggtttttt 119  Q
    |||||||||||||||||| ||| | ||||||||||||||||||||| ||||||| || || |||||||||||||||||||||||    
T  40301503 tttgagcttatgtaaataaata-gcttttattttaatttataaactctcactaacgaaaagtgtatcttcataaacggtttttt 40301421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 129
Target Start/End: Complemental strand, 19683711 - 19683625
Alignment:
Q  42 cttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||| ||||| ||||||||||||||||||  ||| |||||  | ||||||||||||||||||||| ||||||||||||||    
T  19683711 cttatgtaaatagataaggttttattttaatttataagtttttactaacaaaaattgtatcttcataaacggt-ttttcataaactac 19683625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 22422114 - 22422203
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| |||||||||||||||||||||||| || |||||||  | ||| | ||||| | |||| |||||||||||||||||    
T  22422114 agcttatgtaaataaataagtttttattttaatttataagctctcactaacaaaaatcgcatcttgaaaaactgttttttcataaactac 22422203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 22898302 - 22898391
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| ||||| |||||||||||| |||||  ||| ||||| || |||||||| ||||||| |  ||||||||||||||||    
T  22898302 agcttatgtaaataaataagcttttattttaatctataagttttgactaacgaaaattgtattttcataacccattttttcataaactac 22898391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 23956209 - 23956298
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| |||||||||||| |||||||||||  | ||| ||| || ||||||||||| |||||| |||||| ||||||||||    
T  23956209 agcttatgcaaataaataagtttttatgttaatttataagttctcattaacgaaaattgtatctttataaactgtttttccataaactac 23956298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 32366290 - 32366201
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| ||||| |||| ||||| ||||||| || | ||||| || ||| |||| ||||||||| |||||||||||||||||    
T  32366290 agcttatgtaaataaataagcttttgttttattttataagctcttactaacgaaaatcgtatattcataaactgttttttcataaactac 32366201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 5516227 - 5516127
Alignment:
Q  30 gtttaatttgagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaac-ggttttttcataaacta 128  Q
    ||||| |||||||||||| ||||| ||||| |||| | ||||||||||| || ||||||| || |||||||| || |||||| | |||||||||||||||    
T  5516227 gtttattttgagcttatgcaaataaataagcttttgtgttaatttataagctctcactaacgaaaattgtatttttataaactgtttttttcataaacta 5516128  T
Q  129 c 129  Q
    |    
T  5516127 c 5516127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 446565 - 446498
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaa 110  Q
    |||||||||||  |||| |||||||||||||||||| || ||||||| || |||||||||||||||||    
T  446565 ttatgtaaataagtaagcttttattttaatttataagctctcactaacgaaaattgtatcttcataaa 446498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 17532075 - 17532000
Alignment:
Q  55 ataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacgg-ttttttcataaactac 129  Q
    ||||||||||||||||||||||||||| || |||| || ||  |||||||||||||||| | ||||||||||||||    
T  17532075 ataagtttttattttaatttataaactctccctaaagaaaagcgtatcttcataaacggatgttttcataaactac 17532000  T

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Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 30382217 - 30382284
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaa 110  Q
    ||||||||||| ||||| |||| ||||||||||||| |||||||||| || |||||||||||| ||||    
T  30382217 ttatgtaaataaataagcttttgttttaatttataagctttcactaacgaaaattgtatcttcctaaa 30382284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 2757031 - 2757102
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaac 111  Q
    |||||||||||||| |||||||||||||||| ||||||| || ||||||| || || ||| | |||||||||    
T  2757031 agcttatgtaaataaataagtttttattttattttataagctctcactaacgaaaactgttttttcataaac 2757102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 126
Target Start/End: Complemental strand, 736105 - 736019
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaac 126  Q
    |||||||||| ||| |||||||||||| |||||||||||  | ||| |||  | |||| |||||||||||||  |||||||||||||    
T  736105 agcttatgtatataaataagtttttatgttaatttataagttctcaataacaaaaattatatcttcataaactattttttcataaac 736019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 12223950 - 12223904
Alignment:
Q  83 tcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||| ||| |||||||||||||| |||||||||||||||||    
T  12223950 tcactaatgaaaatggtatcttcataaactgttttttcataaactac 12223904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 128
Target Start/End: Complemental strand, 21788596 - 21788510
Alignment:
Q  42 cttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaacta 128  Q
    |||||| ||||| ||||| |||||| |||||| |||| || ||||||| || |||| |||||||||||   ||||||||||||||||    
T  21788596 cttatgcaaataaataagcttttatattaattcataagctctcactaacgaaaattttatcttcataagttgttttttcataaacta 21788510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 4027066 - 4026977
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| ||||| | |||| |||||| ||||  | |||||||  | |||||||||||||||| | |||||||||||||||||    
T  4027066 agcttatgcaaataaataagctattatgttaattcataagttctcactaacaaaaattgtatcttcataagctgttttttcataaactac 4026977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 8832598 - 8832509
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| ||||| |||||| |||||| ||||  ||||||||| || |||||||||||  ||| | || ||||||||||||||    
T  8832598 agcttatgcaaataaataagcttttatgttaattcataagttttcactaacgaaaattgtatctttctaacctgtgttttcataaactac 8832509  T

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Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 10574115 - 10574196
Alignment:
Q  49 aaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacgg-ttttttcataaactac 129  Q
    ||||| ||||| |||||||||||||||||| || || || | || | ||||||||||||||| || ||||||||||||||||    
T  10574115 aaataaataagcttttattttaatttataagctctcgctgacgaaatttgtatcttcataaatggtttttttcataaactac 10574196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 26440232 - 26440196
Alignment:
Q  42 cttatgtaaatatataagtttttattttaatttataa 78  Q
    |||||||||||| ||||||||||||||||||||||||    
T  26440232 cttatgtaaataaataagtttttattttaatttataa 26440196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 38471745 - 38471825
Alignment:
Q  49 aaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||| |||| || |||| |||||| ||||  | ||||||| || ||||||| |||||||||| |||||||||||||||||    
T  38471745 aaataaataaattgttatcttaattcataagttctcactaacgaaaattgtaccttcataaactgttttttcataaactac 38471825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 25836660 - 25836746
Alignment:
Q  42 cttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||| ||||| ||||| |||||| ||| || ||||  | ||||||| ||||||||| ||||||||| | |||||||||||||||||    
T  25836660 cttatgcaaataaataagcttttatgtta-ttcataagttctcactaacgataattgtgtcttcataagccgttttttcataaactac 25836746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 2401570 - 2401656
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||||||||| |||| ||||||||||||| |||||  | | |||||  | |||||||| ||||||| |  ||||||||||||||||    
T  2401570 ttatgtaaataaataaatttttattttaatctataagttctgactaacaaaaattgtattttcataacccattttttcataaactac 2401656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 12267115 - 12267049
Alignment:
Q  63 ttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||| |||||||||||  |||||||||| | |||| ||||||||||| |  ||||||||||||||||    
T  12267115 ttatgttaatttataagttttcactaataaaaattatatcttcataacctattttttcataaactac 12267049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 17546562 - 17546476
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||||||||| |||| ||||||| ||| |||||||  ||||||||| || |||  ||| |||||||   |||||||||||||||||    
T  17546562 ttatgtaaataaataaatttttatgttagtttataagttttcactaacgaaaatgatatattcataagttgttttttcataaactac 17546476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 887553 - 887464
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| ||||| |||||| |||||| ||||  | |  ||||||| |||||||||||||||| | | |||| ||||||||||    
T  887553 agcttatgcaaatagataagcttttatgttaattcataagttcttgctaatgaaaattgtatcttcataagcaggttttacataaactac 887464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 220
Target Start/End: Original strand, 22422265 - 22422294
Alignment:
Q  191 ctctaaaataagctaatccaaacaggccct 220  Q
    ||||||||||||||||||||||||||||||    
T  22422265 ctctaaaataagctaatccaaacaggccct 22422294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 33321257 - 33321346
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| ||||   ||||| |||||| | || || |||||||  | |||||||||||||||| | |||||||||||||||||    
T  33321257 agcttatgcaaataaataaacctttatgttaattcacaagctctcactaacaaaaattgtatcttcataagctgttttttcataaactac 33321346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 36501460 - 36501549
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| ||||| |||||| |||||| || |  | ||||||| |  |||| ||||||||||| | |||||||||||||||||    
T  36501460 agcttatgcaaataaataagcttttatgttaattcatgagttctcactaacgcaaattttatcttcataagctgttttttcataaactac 36501549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 15155955 - 15155867
Alignment:
Q  39 gagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaact 127  Q
    ||||||||| ||||| |||||||||||| |||||| ||||  | ||| ||| |  ||||||| |||| ||||  |||||||||||||||    
T  15155955 gagcttatgaaaataaataagtttttatcttaattcataagttctcattaacggaaattgtaccttcttaaattgttttttcataaact 15155867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 22898452 - 22898484
Alignment:
Q  190 gctctaaaataagctaatccaaacaggccctta 222  Q
    ||||||||||||||||||||||||| |||||||    
T  22898452 gctctaaaataagctaatccaaacaagccctta 22898484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 29774877 - 29774797
Alignment:
Q  49 aaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||| ||||| |||||  |||||| ||||  | ||||||| || |||||||| ||||||| | |||||||||||||||||    
T  29774877 aaataaataagcttttacgttaattcataagttctcactaacgaaaattgtattttcataagccgttttttcataaactac 29774797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 31165175 - 31165092
Alignment:
Q  35 atttgagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggtttttt 119  Q
    ||||||||||||| ||||| ||||| |||||| |||||||||||  || |||||| || || ||||||||  ||||| |||||||    
T  31165175 atttgagcttatgcaaataaataag-ttttatgttaatttataagtttccactaacgaaaaatgtatctttgtaaactgtttttt 31165092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 121
Target Start/End: Complemental strand, 59408 - 59327
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttca 121  Q
    |||||||||||||| |||||||||||||||||||||||| |||||| || |||  || |||||||||||||| |||||||||    
T  59408 agcttatgtaaataaataagtttttattttaatttataagctttcattagtgaatatcgtatcttcataaaccgttttttca 59327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 15709837 - 15709926
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||||| |||||| || || |||||||||||||||||| |||| |||||||| |||||||||| ||| |||| ||||||||||||||||    
T  15709837 agcttatttaaataaatgagcttttattttaatttataagcttttactaatgaaaattgtatctacattaacgattttttcataaactac 15709926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 129
Target Start/End: Complemental strand, 41419646 - 41419553
Alignment:
Q  36 tttgagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||| ||||| |||||||||||| |||||| ||||  | ||||||| || |||||||||||||||| | |||||||||||||||||    
T  41419646 tttgagcttatgaaaataaataagtttttatgttaattgataagttctcactaacgaaaattgtatcttcataagctgttttttcataaactac 41419553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 26003136 - 26003053
Alignment:
Q  42 cttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaa 125  Q
    |||||||||||| ||||||||||||||||||||| || || ||||||| || ||||||||||||||||||   |||||||||||    
T  26003136 cttatgtaaataaataagtttttattttaatttacaagctctcactaacgaaaattgtatcttcataaaccactttttcataaa 26003053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 29418700 - 29418786
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||| ||||| |||||||||||| |||||||||||| | ||||||| || ||||||| |||||||||  |||||||||||||||||    
T  29418700 ttatgcaaataaataagtttttatcttaatttataaattctcactaacgaaaattgtaccttcataaattgttttttcataaactac 29418786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 4728985 - 4728897
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| ||||| |||||||||||||||||| || | ||||| || |||| ||| ||||||||| |||||||||||||||||    
T  4728985 agcttatgtaaataaataagcttttattttaatttataagctcttactaaggaaaattatat-ttcataaactgttttttcataaactac 4728897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 16722167 - 16722078
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||| || |  |||||| |||||||||||||| ||||||| || || |||||||||||||||||||| ||| ||||||||    
T  16722167 agcttatgtaaataaatcaacttttatcttaatttataaactctcactaacgaaaagtgtatcttcataaacggtttcttcgtaaactac 16722078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 38461225 - 38461312
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataa--actttcactaatgataattgtatcttcataaacggttttttcataaa 125  Q
    |||||||||||||| ||||||||||||||||||||||||   || |||||||  | |||| ||||||||||||| |||||||||||||    
T  38461225 agcttatgtaaataaataagtttttattttaatttataagttctctcactaacaaaaattatatcttcataaactgttttttcataaa 38461312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 29659202 - 29659112
Alignment:
Q  39 gagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||||||| ||||| |||||||||||| |||||| ||||  | |||||||||| |||||||  ||||||||| |||||||| ||||||||    
T  29659202 gagcttatgcaaataaataagtttttatcttaattcataagttctcactaatgaaaattgtactttcataaactgttttttcttaaactac 29659112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 28357282 - 28357193
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| ||||| |||||| |||||||||||  ||||  ||| || |||||||||||||||| | |||||||||||||||||    
T  28357282 agcttatgcaaataaataagcttttatgttaatttataagttttcgttaacgaaaattgtatcttcataacctgttttttcataaactac 28357193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 28357496 - 28357404
Alignment:
Q  37 ttgagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||||||||| ||||| |||||||||||| ||||||  |||  | ||||||| || ||||| | |||||||||| |||||||||||||||||    
T  28357496 ttgagcttatgcaaataaataagtttttatcttaattcgtaagttctcactaacgaaaattggaccttcataaactgttttttcataaactac 28357404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 128
Target Start/End: Complemental strand, 33757226 - 33757140
Alignment:
Q  42 cttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaacta 128  Q
    |||||||||||||||||| |||||||||||||||||| || ||| |    | ||| |||||||||| ||| ||||||||||||||||    
T  33757226 cttatgtaaatatataagcttttattttaatttataagctctcatttgcaaaaatcgtatcttcattaactgttttttcataaacta 33757140  T

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Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 129
Target Start/End: Complemental strand, 28625619 - 28625532
Alignment:
Q  42 cttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||| ||||| ||||| |||||| |||||| |||   | ||||||| || |||||||||||||||| | |||||||||||||||||    
T  28625619 cttatgcaaataaataagcttttatgttaattcataggttctcactaacgaaaattgtatcttcataagctgttttttcataaactac 28625532  T

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Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 43268577 - 43268652
Alignment:
Q  36 tttgagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaac 111  Q
    |||||||||||| ||||| ||||| |||||| |||||||||||  | |||||||  | ||||||||||||||||||    
T  43268577 tttgagcttatgaaaataaataagcttttatgttaatttataagttctcactaacaaaaattgtatcttcataaac 43268652  T

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Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 2878622 - 2878707
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaac 126  Q
    |||||||||||||| ||||| |||||| |||||||| ||  |||||||||  | |||||||||||| ||||| ||| ||||||||||    
T  2878622 agcttatgtaaataaataagcttttatgttaatttaaaagttttcactaacaaaaattgtatcttc-taaactgttgtttcataaac 2878707  T

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Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 129
Target Start/End: Original strand, 5203386 - 5203468
Alignment:
Q  47 gtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||||| ||||| |||||||||||||||||| || || ||||  | | ||||||||||||||| | |||| |||||||||||    
T  5203386 gtaaataaataagcttttattttaatttataagctctctctaacaaaatttgtatcttcataaatgattttctcataaactac 5203468  T

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Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 43319129 - 43319055
Alignment:
Q  55 ataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||| |||||| ||||  | ||||||| || |||| || |||||||||| |||||||||||||||||    
T  43319129 ataagtttttatcttaattcataagttctcactaacgaaaattataccttcataaactgttttttcataaactac 43319055  T

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Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 780513 - 780602
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||||| |||||| ||||| |||||||||||| |||||  | | |||||||| |||||||| || |||| |  ||||||||||||||||    
T  780513 agcttatataaatagataagcttttattttaatctataagttctgactaatgaaaattgtattttgataacccattttttcataaactac 780602  T

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Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 11991436 - 11991360
Alignment:
Q  49 aaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaac 126  Q
    ||||| ||||| |||||| |||||||||||||| ||||||| || |||||||| ||||| |||  |||||||||||||    
T  11991436 aaataaataagcttttatgttaatttataaactctcactaacgaaaattgtatgttcat-aactattttttcataaac 11991360  T

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Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 27806056 - 27805967
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| ||||  |||||| |||||||||||  |||||||||  | ||||||||||| ||||   |||||||||||||||||    
T  27806056 agcttatgcaaataaataaacttttatgttaatttataagttttcactaacaaaaattgtatctttataacatgttttttcataaactac 27805967  T

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Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 6008203 - 6008255
Alignment:
Q  58 agtttttattttaatttataaactttcactaatgataattgtatcttcataaa 110  Q
    |||||||||||||||||||||||| ||||  | || |||||||||||||||||    
T  6008203 agtttttattttaatttataaactctcacagacgaaaattgtatcttcataaa 6008255  T

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Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 129
Target Start/End: Complemental strand, 15122631 - 15122596
Alignment:
Q  94 aattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||||||||||||| |||||||||||||||||    
T  15122631 aattgtatcttcataaactgttttttcataaactac 15122596  T

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Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 1943135 - 1943065
Alignment:
Q  41 gcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaac 111  Q
    ||||||| ||||| ||||| ||||||  ||||| ||||  | |||||||||| ||||||||||||||||||    
T  1943135 gcttatgcaaataaataagcttttatgctaattcataagttctcactaatgaaaattgtatcttcataaac 1943065  T

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Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 5559864 - 5559956
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacgg---ttttttcataaactac 129  Q
    |||||||| ||||| ||||| |||||| | |||| ||||| | ||||||| || |||||||||||||||| | |   ||||||||||||||||    
T  5559864 agcttatgcaaataaataagcttttatgtaaattcataaattctcactaacgaaaattgtatcttcataagctgcttttttttcataaactac 5559956  T

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Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 9477474 - 9477388
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||| ||||| |||||||||||| |||||| ||||  | ||| ||| || ||||||| |||||| ||| |||||||||||| ||||    
T  9477474 ttatgcaaataaataagtttttatcttaattcataagttctcagtaacgaaaattgtaccttcatgaactgttttttcataacctac 9477388  T

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Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 13625465 - 13625555
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttt-tcataaactac 129  Q
    |||||||| ||||| ||||  |||||| |||||||||||  ||||||||| || |||| |||||| |||| | |||||| |||||||||||    
T  13625465 agcttatgcaaataaataaacttttatattaatttataagttttcactaacgaaaattttatctttataagctgtttttatcataaactac 13625555  T

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Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 13060547 - 13060636
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||| ||| ||||| ||||| |||||| |||||| ||||  | ||||||| || ||| ||| |||||||| | |||||||||||||||||    
T  13060547 agctaatgcaaataaataagcttttatgttaattcataagttctcactaacgaaaatggtaacttcataagctgttttttcataaactac 13060636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 17657383 - 17657294
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| ||||  |||||| |||||| ||||  | ||||||| || ||| ||||||||||||   |||||||||||||||||    
T  17657383 agcttatgcaaataaataaccttttatgttaattcataagttctcactaacgaaaatcgtatcttcataagatgttttttcataaactac 17657294  T

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Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 29922134 - 29922223
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| ||||| |||||| |||||| |||| || |||||||  | |||||||| | ||||| | || ||||||||||||||    
T  29922134 agcttatgcaaataaataagcttttatattaattcataagctctcactaaaaaaaattgtatatgcataagctgtgttttcataaactac 29922223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 39154706 - 39154795
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| ||||| |||| | |||||| ||||  | ||| |||| | ||||| |||||||||| | |||||||||||||||||    
T  39154706 agcttatgcaaataaataagcttttgtgttaattcataagttctcaataataaaaattgcatcttcataatcagttttttcataaactac 39154795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 2531452 - 2531380
Alignment:
Q  40 agcttatgtaaatatataagttttt-attttaatttataaactttcactaatgataattgtatcttcataaac 111  Q
    ||||| |||||||| |||||||||| ||||| ||||||||||| ||  ||| || ||| ||||||||||||||    
T  2531452 agcttgtgtaaataaataagttttttatttttatttataaactctcgttaacgaaaatcgtatcttcataaac 2531380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 6025984 - 6026020
Alignment:
Q  94 aattgtatcttcataaacggttttttcataaactacg 130  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  6025984 aattgtatctttataaaccgttttttcataaactacg 6026020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 33803754 - 33803822
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaac 111  Q
    ||||||||||| |||| ||||||| ||| || ||||  ||| |||||||| |||||||| |||||||||    
T  33803754 ttatgtaaataaataaatttttatattacttcataagtttttactaatgaaaattgtatattcataaac 33803822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 35536985 - 35536898
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaacta 128  Q
    |||||||| ||||| ||||| |||||| ||| || ||||  | ||| ||| || |||||||||||||||| | ||||||||||||||||    
T  35536985 agcttatgcaaataaataagcttttatatta-ttcataagttctcagtaacgaaaattgtatcttcataagctgttttttcataaacta 35536898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 39990720 - 39990632
Alignment:
Q  37 ttgagcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaa 125  Q
    |||||||||||||||||  ||| ||||||| |||||| ||||  ||| |||||| | |||||||| ||| |||   |||||||||||||    
T  39990720 ttgagcttatgtaaataattaaatttttatcttaattcataagattttactaataaaaattgtatattcttaagatgttttttcataaa 39990632  T

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Target: scaffold1130 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1130
Description:

Target: scaffold1130; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 2392 - 2325
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcat 107  Q
    |||||||||||||| ||||| ||||||||||||||||||||| ||  |||||| ||||||||||||||    
T  2392 agcttatgtaaataaataagattttattttaatttataaactctccttaatgaaaattgtatcttcat 2325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 24888 - 24799
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||||| ||||| |||||||||||| |||||||||||  | ||||||||||  |||||||||| || | | |||||||||||||||||    
T  24888 agcttatgcaaataaataagtttttatgttaatttataagttctcactaatgaatattgtatcttgattagctgttttttcataaactac 24799  T

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Target: scaffold0004 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 242585 - 242670
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaa 125  Q
    |||||||||||||| ||| |||||||||||||||||||| || || |||| || ||| |||||||||||| | |||||| ||||||    
T  242585 agcttatgtaaataaataggtttttattttaatttataagctctcgctaacgaaaatcgtatcttcataacctgtttttccataaa 242670  T

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Target: scaffold0100 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 38398 - 38483
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaa 125  Q
    |||||||||||||| ||||| |||||||||||||||||| || || |||| || ||| | |||||||||| | |||||| ||||||    
T  38398 agcttatgtaaataaataagcttttattttaatttataagctctcgctaacgaaaatcgcatcttcataacctgtttttccataaa 38483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 19696 - 19625
Alignment:
Q  40 agcttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaac 111  Q
    |||||||||||||| ||||| ||||||||||| ||||||  ||||| |||  | ||||||||||||||||||    
T  19696 agcttatgtaaataaataagattttattttaacttataagatttcattaacaaaaattgtatcttcataaac 19625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 278941 - 279026
Alignment:
Q  43 ttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    ||||||||||| ||||| |||  ||||||||||||| || |||||||  | | ||||||||| ||||| ||||||||||||||||||    
T  278941 ttatgtaaataaataagctttc-ttttaatttataagctctcactaacaaaatttgtatctttataaatggttttttcataaactac 279026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 40625 - 40690
Alignment:
Q  46 tgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaac 111  Q
    |||||||| ||||| |||||||||||||||||| || ||  ||| || |||||||||||| |||||    
T  40625 tgtaaataaataagattttattttaatttataagctctccttaacgaaaattgtatcttcttaaac 40690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 14693 - 14780
Alignment:
Q  42 cttatgtaaatatataagtttttattttaatttataaactttcactaatgataattgtatcttcataaacggttttttcataaactac 129  Q
    |||||| ||||| ||||| ||| || |||||||||||  | ||||||| || |||||||| || |||||| | |||||||||||||||    
T  14693 cttatgcaaataaataagctttcatgttaatttataagttctcactaacgaaaattgtatatttataaactgatttttcataaactac 14780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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