View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20479_low_101 (Length: 238)
Name: NF20479_low_101
Description: NF20479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20479_low_101 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 26927223 - 26927433
Alignment:
| Q |
16 |
atgaatttgtactgtctctggaattgatgttgttgaattacatgtaataaatagaccgaaatttagcatgaaacacatagcagaacctgttgtgtgcata |
115 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||| |
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| T |
26927223 |
atgagtttgtattgtctctggaattgatgttgttgaattacatgtaataaatagaccgaaatttagcttgaaacacgtagcagaacctgctgtgtgcata |
26927322 |
T |
|
| Q |
116 |
attgatctcattggctgttaacaaccgatgttccgacgacaattaattgctggggaattcctaaccggtgacagttaacagtcgaaggacataagagtct |
215 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| | |||||||||| |||||| ||||||||||| |
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| T |
26927323 |
attgatcttatcggctgttaacaaccgatgttccgacgacaattaactgctgaggaattcctaaccggcggcagttaacagccgaagggcataagagtct |
26927422 |
T |
|
| Q |
216 |
ttttcaagtat |
226 |
Q |
| |
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||||||||||| |
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| T |
26927423 |
ttttcaagtat |
26927433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 5731835 - 5731732
Alignment:
| Q |
22 |
ttgtactgtctctggaattgatgttgttgaattacatgtaataaatagaccgaaa-tttagcatgaaacacatagcagaacctgttgtgtgcataattga |
120 |
Q |
| |
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|||||||| |||||||||||||||| |||||||||||| ||||| || || ||| ||| || ||||||||||||| ||| |||||| ||||||||| | |
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| T |
5731835 |
ttgtactgcctctggaattgatgttattgaattacatgaaataagtatgccaaaattttggctggaaacacatagcataacatgttgtctgcataattca |
5731736 |
T |
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| Q |
121 |
tctc |
124 |
Q |
| |
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|||| |
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|
| T |
5731735 |
tctc |
5731732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 37436958 - 37436854
Alignment:
| Q |
22 |
ttgtactgtctctggaattgatgttgttgaattacatgtaataaatagaccgaaatttagcatgaaacacatagcagaacctgttgtgtgcataattgat |
121 |
Q |
| |
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|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||| |||||||||||| |||||| |||||||||||| |
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| T |
37436958 |
ttgtactgcctctggaattgatgttattgaattacatgtaataaatagaccgaaatttagcttaaaaaacatagcagaacttgttgtctgcataattgat |
37436859 |
T |
|
| Q |
122 |
ctcat |
126 |
Q |
| |
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||||| |
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|
| T |
37436858 |
ctcat |
37436854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 135
Target Start/End: Original strand, 27733195 - 27733308
Alignment:
| Q |
22 |
ttgtactgtctctggaattgatgttgttgaattacatgtaataaatagaccgaaatttagcatgaaacacatagcagaacctgttgtgtgcataattgat |
121 |
Q |
| |
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|||||||| ||||| |||||||||| |||||||| | || |||||||| || |||||| || ||||| ||||||||||||||| ||| ||||||||| || |
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| T |
27733195 |
ttgtactgcctctgaaattgatgttattgaattataggtgataaataggccaaaatttggcttgaaaaacatagcagaacctgctgtctgcataattcat |
27733294 |
T |
|
| Q |
122 |
ctcattggctgtta |
135 |
Q |
| |
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|||| ||| |||| |
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|
| T |
27733295 |
ttcatcggcagtta |
27733308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 43668299 - 43668260
Alignment:
| Q |
30 |
tctctggaattgatgttgttgaattacatgtaataaatag |
69 |
Q |
| |
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||||||||||||||||||||||||| || ||||||||||| |
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|
| T |
43668299 |
tctctggaattgatgttgttgaattgcacgtaataaatag |
43668260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 31598678 - 31598582
Alignment:
| Q |
22 |
ttgtactgtctctggaattgatgttgttgaattacatgtaataaatagaccgaaatttagcatgaaa-cacatagcagaacctgttgtgtgcataatt |
118 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||| || ||| || || ||||| ||||||| |||||||||||| ||||||||| |
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| T |
31598678 |
ttgtactgcctctggaattgatgttgttgaattacatgtaataaataggcc-aaaattggcttgaaatcacatagtagaacctgttgtctgcataatt |
31598582 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 17266641 - 17266537
Alignment:
| Q |
22 |
ttgtactgtctctggaattgatgttgttgaattacatgtaataaatagaccgaaatttagcatgaaacacatagcagaacctgttgtgtgcataattgat |
121 |
Q |
| |
|
|||||||| |||| |||||||||| |||||||| | |||||||| | | |||||||| | ||||||||||| ||||||||||| | || ||||||||| |
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| T |
17266641 |
ttgtactgcctctagaattgatgtaattgaattaaaggtaataaaaatatcgaaattttgtttgaaacacatatcagaacctgttatctgaataattgat |
17266542 |
T |
|
| Q |
122 |
ctcat |
126 |
Q |
| |
|
||||| |
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|
| T |
17266541 |
ctcat |
17266537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 15394237 - 15394183
Alignment:
| Q |
22 |
ttgtactgtctctggaattgatgttgttgaattacatgtaataaatagaccgaaa |
76 |
Q |
| |
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||||| || ||||||||||||||| ||||||||||| ||||||||||| |||||| |
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| T |
15394237 |
ttgtattgcctctggaattgatgtggttgaattacaggtaataaataggccgaaa |
15394183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 15393954 - 15393907
Alignment:
| Q |
22 |
ttgtactgtctctggaattgatgttgttgaattacatgtaataaatag |
69 |
Q |
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||||| ||||||||||||||| || ||||||||||||| ||||||||| |
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| T |
15393954 |
ttgtattgtctctggaattgacgtggttgaattacatgcaataaatag |
15393907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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